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Scientists develop inflammation test that may predict cardiovascular disease

An assessment blending several measures of immune-cell responsiveness predicted cardiovascular problems in individuals who likely would have slipped under the radar.  A blood test developed by Mark…

Source: Scientists develop inflammation test that may predict cardiovascular disease

Scientists develop inflammation test that may predict cardiovascular disease

An assessment blending several measures of immune-cell responsiveness predicted cardiovascular problems in individuals who likely would have slipped under the radar.

 A blood test developed by Mark Davis and his colleagues may be able to predict the development of cardiovascular disease.

Timothy Archibald

A blood test devised by Stanford University School of Medicinescientists spits out a single number that strongly predicts the development of the world’s most prevalent medical disorder: cardiovascular disease.

While more research remains to be done, there’s good reason to suspect that this test could be used to predict many other diseases of old age, said Mark Davis, PhD, professor of microbiology and immunology.

A paper describing the test was published online Oct. 13 in Cell Systems. Davis is the senior author. Lead authorship is shared by former postdoctoral scholars Shai Shen-Orr, PhD, who is now an assistant professor at Technion-Israel Institute of Technology in Haifa, and David Furman, PhD, now a consulting associate professor at Stanford.

Mounting evidence suggests that many diseases that become more common with advancing age do so because the immune system begins to malfunction, said Davis, a Howard Hughes Medical Investigator and the director of Stanford’sInstitute for Immunity, Transplantation and Infection.

In addition to responding more sluggishly to dangers such as infectious pathogens or incipient tumors, the aging immune system tends to spend its downtime — periods when it has no imminent challenge to respond to — in a low-grade inflammatory state. Medical experts are increasingly convinced that this constantly thrumming, systemic, inflammatory activity threatens diverse tissues throughout the body.

A better test?

Cholesterol testing, a diagnostic mainstay, flags cardiovascular risk only about half of the time, said Davis, who is also the Burt and Marion Avery Family Professor. “For too many men experiencing a heart attack or stroke, the first observed hint of cardiovascular risk is their death,” he said.

Testing for levels of CRP, a circulating protein linked to inflammation, has been shown to further enhance the prediction of cardiovascular risk, even among patients with normal cholesterol levels. A CRP reading is relatively simple to get, requiring only a blood draw and relatively straightforward lab tests.

The new test developed by the Stanford researchers is more complicated but appears to have superior diagnostic value to either the cholesterol or CRP test. Rather than testing circulating inflammatory proteins, it tests for the response of immune cells themselves to inflammation — a signal that appears to be more stable and hence a more robust diagnostic. In the study, it was able to detect early cardiovascular irregularities in otherwise asymptomatic individuals.

The researchers took advantage of data from the first three years of what was to become a nine-year longitudinal project carried out at Stanford under the direction of study co-author Cornelia Dekker, MD, a professor of pediatric infectious disease. In all, 90 adults, divided into two groups — people younger than 40 and people older than 60 — were assessed annually at high resolution with a battery of tests as to the state of their immune system, how it varied from year to year within and between individuals and how this related to clinical markers of inflammation.

Isolating immune cells

For the Cell Systems study, the researchers isolated several types of immune cells from individual blood samples and measured these cells’ responses to stimulation by circulating signaling proteins called cytokines. Many cytokines tend to shift the immune system into high gear.

Its predictive accuracy in cardiovascular disease further substantiates the inflammatory underpinnings of that prevalent, age-related condition.

The investigators recorded the extent to which several different types of immune cells mixed with cytokines in a lab dish increased the activation of intracellular substances called STAT proteins. In response to this stimulation, STAT proteins are known to undergo small chemical changes, causing them to head into a cell’s nucleus and turn on batteries of genes that stir the erstwhile quiescent cell into a frenzy of immunological activity.

When immune cells from young people were stimulated with certain cytokines, the activation levels of STAT proteins skyrocketed. When the same thing was done to immune cells from old people, STAT-protein activity rose a lot less.

However, pre-stimulation levels of STAT-protein activation in immune cells from old people were substantially higher than in those from young people, suggesting that older people’s immune systems are constantly somewhat revved up when they should be at rest.

Still, older people’s pre-stimulation STAT-protein activation levels, and these proteins’ activation in response to cytokine stimulation, varied widely between individuals. Some showed few signs of it, while in others it was pronounced.

Cytokine response score

The investigators blended 15 separate cytokine-responsiveness measurements to generate a single number called a Cytokine Response Score. This measure, which varied considerably among different older adults, was quite stable from year to year for any given individual. A higher CRS is better, as it indicates a more-responsive immune system and lower background inflammation.

Intriguingly, individuals taking fish-oil supplements had higher scores. (Fish oil is known to have anti-inflammatory properties.) No other drug tested showed this correlation.

At the suggestion of study co-author Francois Haddad, MD, a clinical associate professor of cardiovascular medicine, the cytokine response score of each of 40 older subjects was then cross-referenced against cardiovascular-health assessments they underwent up to two years later. These assessments included a comprehensive clinical history and tests of atherosclerotic plaque, arterial stiffness and ventricular function.

Of the 40 subjects, 18 were in good cardiovascular health. Ten had already suffered cardiovascular events, and seven had sufficient atherosclerosis to be considered subclinical. Five others had lesser signs of cardiovascular problems and were considered borderline.

The researchers found that cytokine response scores were inversely correlated with clinical signs of atherosclerosis and with two measures associated with the heart’s ability to relax between beats. Importantly, the borderline subjects also had low cytokine response scores. The scores’ predictive value exceeded that of CRP tests, the current standard for measuring inflammation-based cardiovascular risk.

For now, the test to obtain a cytokine response score is not available in clinics; it’s too complex and expensive. Davis said he and his colleagues want to try to simplify it and drive down the cost.

“The CRS may be a useful proxy for healthy aging,” said Davis. “And its predictive accuracy in cardiovascular disease further substantiates the inflammatory underpinnings of that prevalent, age-related condition.”

The team’s work is an example of Stanford Medicine’s focus on precision health, the goal of which is to anticipate and prevent disease in the healthy and precisely diagnose and treat disease in the ill.

Other Stanford co-authors of the study are former research assistant Brian Kidd, PhD, now at the Icahn School of Medicine at Mount Sinai in New York City; research and development engineer Patricia Lovelace; research assistant Yin-Wen Huang; Yael Rosenberg-Hasson, PhD, immunoassay and technical director at the Institute for Immunity, Transplantation and Infection; Sally Mackey, associate director of the Stanford-LPCH Vaccine Program; Armaghan Grisar, MD, research fellow at the Stanford Cardiovascular Institute; associate professor of microbiology and immunology Holden Maecker, PhD; professor of microbiology and immunology Yueh-hsiu Chien, PhD; Joseph Wu, MD, PhD, professor of radiology and director of the Stanford Cardiovascular Institute; and former associate professor of pediatrics Atul Butte, MD, PhD, now at the University of California-San Francisco.

The study was funded by the National Institute of Allergy and Infectious Diseases (grants U19AI057229 and U19AI090190), the Ellison Medical Foundation, the Howard Hughes Medical Institute, the Israeli Science Foundation, the Stanford Cardiovascular Institute and the Stanford Center on Longevity.

Your complete DNA sequence will help shape the future of medicine

Research identifies key genetic link in the biology of aging

By David Stauth

New research at the Linus Pauling Institute at Oregon State University suggests it may be possible to slow age-related disease with new types of treatments.

Scientists have tracked the syndromes associated with aging to their biochemical roots, and identified a breakdown in genetic communication as part of the problem. The findings imply that aging happens for a reason, and that while aspects of it may be inevitable, there could be ways to slow down disease development.

The newest study relate to a protein, Nrf2, that helps regulate gene expression and the body’s reaction to various types of stressors. The research was published in Free Radical Biology and Medicine, in work supported by the National Institutes of Health and the Medical Research Foundation of Oregon.

“We’re very excited about the potential of this area of research,” said Tory Hagen, corresponding author on this study, and the Helen P. Rumbel Professor for Health Aging Research in the Linus Pauling Institute and the OSU Department of Biochemistry and Biophysics in the College of Science.

“At least one important part of what we call aging appears to be a breakdown in genetic communication, in which a regulator of stress resistance declines with age,” Hagen said. “As people age and their metabolic problems increase, the levels of this regulator, Nrf2, should be increasing, but in fact they are declining.”

Nrf2 is both a monitor and a messenger, OSU researchers say. It’s constantly on the lookout for problems with cells that may be caused by the many metabolic insults of life – oxidative stress, toxins, pollutants, and other metabolic dysfunction.

When it finds a problem, Nrf2 essentially goes back to the cellular nucleus and rings the alarm bell, where it can “turn on” up to 200 genes that are responsible for cell repair, detoxification of carcinogens, protein and lipid metabolism, antioxidant protection and other actions. In their report, the scientists called it a “longevity-assurance” factor.

Nrf2 is so important that it’s found in many life forms, not just humans, and it’s constantly manufactured by cells throughout the body. About half of it is used up every 20 minutes as it performs its life-protective functions. Metabolic insults routinely increase with age, and if things were working properly, the amount of Nrf2 that goes back into the nucleus should also increase to help deal with those insults.

Instead, the level of nuclear Nrf2 declines, and the OSU scientists say they have discovered why.

“The levels of Nrf2, and the functions associated with it, are routinely about 30-40 percent lower in older laboratory animals,” said Kate Shay, director of the Healthy Aging Core Laboratory at OSU and co-author on this study. “We’ve been able to show for the first time what we believe is the cause.”

The reason for this decline, the scientists said, is increasing levels of a micro-RNA called miRNA-146a.

Micro-RNAs have been one of the most profound scientific discoveries of the past 20 years. They were once thought to be “junk DNA” because researchers could see them but they had no apparent biological role. They are now understood to be anything but junk – they help play a major role in genetic signaling, controlling what genes are “expressed,” or turned on and off to perform their function.

In humans, miRNA-146a plays a significant role. It can turn on the inflammation processes that, in something like a wound, help prevent infection and begin the healing process. But with aging, this study now shows that miRNA-146a expression doesn’t shut down properly, and it can significantly reduce the levels of Nrf2.

This can cause part of the chronic, low-grade inflammation that is associated with the degenerative diseases that now kill most people in the developed world, including heart disease, cancer, diabetes and neurological disease.

“The action of miRNA-146a in older people appears to turn from a good to a bad influence,” Shay said. “It may be causing our detoxification processes to decline just when we need them the most.”

Some of the things found to be healthy for individuals, in diet or lifestyle, may be so because they help to conserve the proper balance between the actions of miRNA-146a and Nrf2, the OSU researchers said. Alternatively, it may be possible to reduce excessive levels of miRNA-146a with compounds that interfere with its function. There may also be other micro-RNAs associated with this process, they said, that need further research.

“Overall, these results provide novel insights for the age-related decline in Nrf2 and identify new targets to maintain Nrf2-dependent detoxification with age,” the researchers wrote in their conclusion.

http://lpi.oregonstate.edu/feature-story/research-identifies-key-genetic-link-biology-aging

Your complete DNA sequence will help shape the future of medicine

 

Elimination of HIV-1 Genomes from Human T-lymphoid Cells by CRISPR/Cas9 Gene Editing

Observations suggest that a cure strategy for HIV-1 infection should include methods that directly eliminate the proviral genome from the majority of HIV-1-positive cells, including CD4+ T-cells, a…

Source: Elimination of HIV-1 Genomes from Human T-lymphoid Cells by CRISPR/Cas9 Gene Editing

Elimination of HIV-1 Genomes from Human T-lymphoid Cells by CRISPR/Cas9 Gene Editing

Observations suggest that a cure strategy for HIV-1 infection should include methods that directly eliminate the proviral genome from the majority of HIV-1-positive cells, including CD4+ T-cells, and protect cells from future infection, with little or no harm to the host. The clustered, regularly-interspaced, short palindromic repeats (CRISPR)/CRISPR-associated 9 (Cas9) nuclease has wide utility for genome editing in a broad range of organisms including yeast,Drosophila, zebrafish, C. elegans, and mice, and has been applied in a broad range of in vivo and in vitro studies toward human diseases20,21,22,23,24.

Recently we modified the CRISPR/Cas9 system to enable recognition of specific DNA sequences positioned within the HIV-1 promoter spanning the 5′ long terminal sequence (LTR)25,26. Using this modified system, we now demonstrate excision of integrated copies of the proviral DNA fragment from a latently HIV-1-infected human T-lymphoid cell line, completely eliminating HDAC inhibition-elicited viral production. Results of whole-genome sequencing and comprehensive bioinformatic analysis ruled out any genotoxicity to host cell DNA. Further, we found that lentivirally-delivered CRISPR/Cas9 reduces viral replication upon HIV-1 infection of primary cultured CD4+ T-cells. The results point toward this approach as a promising potential therapeutic avenue to eradicating HIV-1 from T reservoir cells of host patients, to prevent AIDS re-emergence.

http://www.nature.com/articles/srep22555


Your complete DNA sequence will help shape the future of medicine

 

 

Skin cancer, whites and asians

skin-cancer

Vitamin D’s protective effect against cancer works in multiple ways, including:

  • Increasing the self-destruction of mutated cells (which, if allowed to replicate, could lead to cancer)
  • Reducing the spread and reproduction of cancer cells
  • Causing cells to become differentiated (cancer cells often lack differentiation)
  • Reducing the growth of new blood vessels from pre-existing ones, which is a step in the transition of dormant tumors turning cancerous

A study by Dr. William Grant, Ph.D., internationally recognized research scientist and vitamin D expert, found that about 30 percent of cancer deaths — which amounts to 2 million worldwide and 200,000 in the United States — could be prevented each year with higher levels of vitamin D!

Your complete DNA sequence will help shape the future of medicine