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Glioma cancer genes

Molecular Profiling of Glioma

Glioma is a set of tumors that occur in glial cells; glial cells surround and support nerve cells (NCI 2013). The most common subtype of glioma is glioblastoma (GBM), and it is also one of the most difficult cancers to treat. Approximately 22,400 gliomas are diagnosed in the U.S. each year; of those, approximately 12,075 are GBMs (CBTRUS 2012). The 2-year survival rate for GBM is about 27% with standard therapy (Stupp et al. 2009).

In 2007, the World Health Organization defined the current diagnostic categories for gliomas (Louis et al. 2007). Glioma subtypes are defined by presumed cell of origin as well as by invasiveness. Grade I tumors are generally circumscribed and potentially curable by resection. Glioma grades II–IV are diffusely infiltrating and grade IV is highly invasive (Dang, Jin, and Su 2010). The degree of tumor aggressiveness, as defined by proliferation and rapidity of spread, increases with increasing tumor grade and grade I and II are classified as low grade tumors whereas grade III and IV are classified as high grade tumors. The diffuse gliomas include astrocytoma, oligodendroglioma, and oligoastrocytoma, named according to the cell type they resemble under the microscope (Louis et al. 2007). Astrocytomas are the most common subtype of glioma and morphologically resemble astrocytes; astrocytomas most often present as aggressive WHO grade IV glioblastomas (GBM). So called “primary” GBMs develop de novo with no prior history of brain cancer, while “secondary” GBMs progress from lower-grade II and III astrocytomas (Kleihues and Ohgaki 1999). Oligodendrogliomas morphologically resemble oligodendroglial cells and, like astrocytomas, infiltrate the brain. Oligodendrogliomas are not as aggressive as astrocytic tumors with a similar grade and thus have a longer survival. Ependymomas are yet another subclass of glioma; they originate from ependymal cells. Ependymomas do not show the infiltrative behavior seen in astrocytomas and oligodendrogliomas, and therefore surgical resection can be curative. However in the absence of complete surgical resection ependymomas can recur and metastasize within the central nervous system.

The standard treatment for newly diagnosed glioblastoma (grade IV) is biopsy or surgical resection, depending on location of the tumor, followed by treatment with radiotherapy and temozolomide (Dubrow et al. 2013). Treatment for grade I-III gliomas may include biopsy or surgery, and may include chemotherapy or radiotherapy, less frequently (NCI 2013; Omay, Piepmeier, and Knisely 2012).

The Cancer Genome Atlas (TCGA) and other groups have recently classified glioblastoma into gene expression-based subtypes (Phillips et al. 2006; TCGA 2008; Verhaak et al. 2010). These include classical, mesenchymal, neural, and proneural subtypes. Verhaak and colleagues furthered our understanding of the GBM subtypes by correlating genomic data, including DNA mutation and gene copy number changes, with gene expression data (Verhaak et al. 2010, reviewed in Goodenberger and Jenkins 2012). They found classical tumors to be characterized by chromosome 7 gain with amplification of the epidermal growth factor receptor (EGFR), EGFR mutation, and chromosome 10 loss. Mesenchymal tumors are characterized by low levels of NF1 expression together with high expression of genes in the tumor necrosis factor (TNF) family and NF-κB pathway. The neural subtype of glioblastoma expresses proteins associated with neuronal differentiation, and shows features intermediate between proneural and mesenchymal tumors. The majority of “secondary” GBMs (those that progress from lower-grade II and III astrocytomas) are of the proneural subtype. Proneural tumors are characterized by mutations in isocitrate dehydrogenase genes IDH1 and IDH2, and the tumor suppressor p53. Moreover, IDH mutated GBMs have a unique DNA methylation status termed CIMP (CpG island methylator phenotype) and CIMP positive tumors are also proneural but not all proneural GBMs have the CIMP eptitype. Pronerual GBMs with the CIMP epitype have the best prognosis of all subtypes of glioblastomas including proneural GBMs without CIMP.

IDH1/2 mutations have been shown to be early events in gliomagenesis. Two major genetic subtypes of IDH-mutated gliomas have been identified. One subtype defined by TP53 and alpha-thalassemia/mental retardation syndrome x-linked (ATRX) mutations that correlates with an astrocytoma histology (Wakimoto et al. 2014); a second type is characterized by concurrent mutations in homolog of Drosophila capicua (CIC), far upstream element binding protein (FUBP1), telomerase reverse transcriptase (TERT) promoter, and 1p/19q codeletion and is associated with an oligodendroglioma histology. IDH/CIC-mutated tumors are associated with PIK3CA/KRAS mutations, whereas IDH/TP53 tumors are associated with PDGFRA/MET amplification.

The effects of several targeted agents have been studied in glioma: BRAF, EGFR, MEK, PDGFR, VEGF, and other inhibitors have all been tested or are being tested in clinical trials (ClinicalTrials.gov; Patil et al. 2013). A humanized anti-VEGF antibody bevacizumab, an antiangiogenesis agent, is approved by the U.S. FDA for use in recurrent GBM (Patil et al. 2013).

Contributors: Ty W. Abel, M.D., Ph.D., Kenneth D. Aldape, M.D., Stephen W. Clark, M.D., Ph.D., Cindy L. Vnencak-Jones, Ph.D., Bret Mobley, M.D., M.S.

Suggested Citation: Abel, T., K. Aldape, S. Clark, C. Vnencak-Jones, B. Mobley. 2015. Molecular Profiling of Glioma. My Cancer Genome https://www.mycancergenome.org/content/disease/glioma/ (Updated July 15).

Last Updated: July 15, 2015

Disclaimer: The information presented at MyCancerGenome.org is compiled from sources believed to be reliable. Extensive efforts have been made to make this information as accurate and as up-to-date as possible. However, the accuracy and completeness of this information cannot be guaranteed. Despite our best efforts, this information may contain typographical errors and omissions. The contents are to be used only as a guide, and health care providers should employ sound clinical judgment in interpreting this information for individual patient care.

Published by connie dello buono

Connie Dello Buono is based in Sunnyvale California. Her first ebook is about women's health, Birthing Ways Healing Ways and her recent one is about cancer prevention, Curated Healing Ways. She had helped women have holistic childbirth as childbirth educator, founded Motherhealth, to serve seniors in the bay area with holistic caregivers and blogs at www.clubalthea.com with more than 10,000 health and finance related posts. Connie trains her own caregivers, which are the favorites of most bay area seniors who are home bound and alone. She is active in the rehab and nursing facilities, volunteering on music and movement for seniors. She is a member of Lion's club and offered scholarships to students in the Philippines. She is active at churchinsunnyvale.us and has Fridays Bible home study in Sunnyvale using the recovery version of the Bible , free at biblesforamerica.us She loves dancing and teaching and her courses can be found at https://teachclub.com/@thriveafter60 She is California Life Insurance licensed providing life insurance for older adults with health issues and helping women retire safely with income for life. at menloassetca.com , she helps with 401k rollover. 3 Benefit plans - Mortgage protection using term life insurance to pay for mortgage balance in event of death - Final Expense plan using Single Issue Whole Life Insurance, with cash back, disability benefit and guaranteed in the presence of health issues - Fixed Index Annuity retirement plan for safe, accessibility, less fees, less taxes, avoids probate as it goes directly to beneficiaries, rate of return with no downside market participation. She brings compassion and understanding to the needs of her clients, bringing holistic approach in health and life insurance. Her goal is to free families from worries especially during covid with caregivers and life insurance in the presence of health issues, especially for women. She can be reached at 408-854-1883 , motherhealth@gmail.com

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