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Connect with Madeline at Facebook Messenger , Sophie Benedicto
or Email Connie at motherhealth@gmail.com
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By Dr. Mercola
Your kidneys — two bean-shaped organs — are located just below your rib cage one on either side of your spine. Positioned on top of each kidney are your adrenal glands. Each day, your kidneys filter up to 150 quarts of blood and flush out waste products through your urine.
One of the reasons why you need to drink enough water is to ensure healthy kidney function. In fact, chronic low-grade dehydration is one of the most common causes of kidney stones.
Poor kidney function is also associated with a number of other serious health problems, including diabetes, hypertension, and heart disease. Common signs of kidney problems include:
Good kidney function1 is essential for maintaining homeostasis in your body, starting with the composition of your blood. For example, your kidneys are responsible for maintaining proper pH level and electrolyte balance (the ratios of sodium, potassium and phosphates).
They also produce hormones that make red blood cells, and those that help regulate your blood pressure.
Waste products removed by your kidneys and eliminated through your urine include urea and uric acid, produced from the breakdown of proteins and nucleic acids respectively.
Excessive protein intake increases urea, while uric acid is a byproduct of both protein and fructose metabolism. Fructose typically increases uric acid within minutes of ingestion.
I became fully aware of the dramatic and devastating impact fructose has on your uric acid levels when I interviewed Dr. Richard Johnson on this topic.
Most Americans consume three to five times more protein than they need, and two to four times (or more) fructose than is considered safe. These two dietary factors, alone and especially in combination, places significant stress on your kidneys and promote kidney disease and kidney stones.
Kidney stones are particularly linked to a diet high in processed fructose and other sugars, as sugar upsets the mineral relationships in your body by interfering with calcium and magnesium absorption. The phosphorus acid in soda also acidifies your urine, which promotes stone formation.
Analgesic drugs are also known to damage your kidneys when taken in excess, and/or over long periods of time. This includes aspirin, anti-inflammatory drugs (NSAIDs), ibuprofen, naproxen, and acetaminophen — especially when taken in combination with alcohol, even if the amount of alcohol is small.
Research2,3 shows that combining alcohol with acetaminophen raises your risk of kidney damage by 123 percent, compared to taking either of them individually. Long term alcohol consumption and smoking also take their toll on kidney function.
To protect your kidney function, keep the following three basic factors in mind:
•Restrict protein to just what your body needs. An ideal protein intake is likely around one-half gram of protein per pound of lean body mass, which for most is 40 to 70 grams a day.
The American Kidney Fund recommends restricting protein to a maximum of 50 grams if you have kidney disease4
•Restrict fructose to 25 grams per day (about 6 teaspoons), or less (especially if you’re insulin/leptin resistant)
•Drink pure, clean water. Simply swapping out sweetened beverages like sodas and fruit juices for pure water can go a long way toward improving your kidney function and overall health.
The best way to gauge your water needs is to observe the color of your urine (it should be light pale yellow) and the frequency of your bathroom visits (ideally, this is around seven to eight times per day).
Considering the fact that the majority of Americans are overweight or obese, I recommend calculating your individual protein requirement based on lean bodyweight (your total weight minus your fat) only.
For optimal health, I believe most adults need about 1 gram of protein per kilogram of lean body mass (not total body weight), or 0.5 gram of protein per pound of lean body mass.
In this formula, you must first determine your lean body mass. To do that, subtract your percent body fat from 100. For example, if you have 30 percent body fat, then you have 70 percent lean body mass.
Then multiply that percentage (in this case, 0.7) by your current weight to get your lean body mass in pounds or kilos. As an example, if you weigh 170 pounds; 0.7 multiplied by 170 equals 119 pounds of lean body mass.
Using the “0.5 gram of protein” rule, you would need 59.5 or just under 60 grams of protein per day.
100 – % of body fat = % of lean mass X actual weight X 0.5 gm protein = total grams of protein recommended
Example: A 170 lb individual with 30% fat mass
100% total weight – 30% fat mass = 70 % lean mass
0.70 X 170 = 119 X 0.5 = 60 grams of protein recommended
To determine whether you’re getting too much protein, simply calculate your lean body mass as described above, then write down everything you’re eating for a few days, and calculate the amount of daily protein from all sources.
Again, you’re aiming for one-half gram of protein per pound of lean body mass, which would place most people in the range of 40 to 70 grams of protein per day. If you’re currently averaging a lot more than that, adjust downward accordingly.
The chart below can give you a general idea of the protein content of many foods. I personally use Cronometer.com to enter everything I eat and carefully calculate my protein requirement to the gram.
Just be sure to enter the correct foods and amounts into the program, as the results will be inaccurate if you don’t enter the correct details.
| Red meat, pork, and poultry average 6 to 9 grams of protein per ounce.
An ideal amount for most people would be a 3-ounce serving of meat (not 9 or 12 ounce steaks!), which will provide about 18 to 27 grams of protein |
Eggs contain about 6 to 8 grams of protein per egg.
So an omelet made from two eggs would give you about 12 to 16 grams of protein. If you add cheese, you need to calculate that protein in as well (check the label of your cheese) |
| Seeds and nuts contain on average 4 to 8 grams of protein per quarter cup | Cooked beans average about 7 to 8 grams per half cup |
| Cooked grains average about 5 to 7 grams per cup | Most vegetables contain about 1 to 2 grams of protein per ounce |
Interestingly, while fish is typically considered a good source of protein, most fish contain only HALF of the protein found in beef and chicken. The reduced protein content in fish may actually be one reason why the Mediterranean diet is linked to life extension and reduced risk for chronic disease.5 In essence, those who eat more fish than red meat are automatically getting far less protein.
If you have kidney disease, you also need to reduce consumption of foods rich in phosphorous, as they may promote the formation of kidney stones. On the other hand, if you have problems urinating but don’t yet have kidney disease, try adding more potassium-rich foods (primarily vegetables and seeds) to your diet. Depending on the type of kidney stone you have, you may also need to modify your diet in other ways:
•Struvite stones: Found more often in women, these are almost always the result of urinary tract infections
•Cystine stones: Represent a very small percentage of kidney stones. These are the result of a hereditary disorder that causes your kidneys to excrete massive amounts of certain amino acids (cystinuria)
•Uric acid stones: These are a byproduct of protein and fructose metabolism, and are commonly seen with gout. Cutting your protein and fructose consumption is essential for preventing and treating these types of stones. Taking potassium citrate (which lowers urine acidity and reduces urine excretion of calcium) may also help prevent uric acid stones6
•Calcium oxalate stones:7 These are the most common. About 80 percent of kidney stones are calcium based, and about 80 percent of those are calcium oxalate stones. Typically, they are the result of insufficient water intake and dietary factors, including excessive oxalate, protein, and processed salt consumption
Oxalate is found in some fruits and vegetables, but your liver produces most of your oxalate. If you are found to have oxalate stones, your physician may recommend avoiding oxalate-rich foods. Also, make sure you’re getting enough magnesium, as magnesium helps prevent calcium from combining with oxalate to form stones8
If you have calcium oxalate stones, rather than reducing your calcium intake you’ll want to minimize the amount of oxalates in your body. Soy and beer are two primary culprits that should be avoided. For reasons that are unclear, grapefruit juice has been shown to increase the risk of kidney stones9 and is therefore best avoided. Other foods that contain high levels of oxalate10 that you’ll want toavoid if you have calcium oxalate kidney stones include:
| Spinach | Rhubarb | Chocolate |
| Parsley | Beetroot | Most legumes,11 including green beans |
| Wheat and other grain-based flours12 | Pepper | Nuts13 |
Potassium is a nutrient that receives a great deal of attention when you have kidney disease. On the one hand, potassium (a mineral and electrolyte) is essential for your cells, tissues, and organs to function properly. It plays a vital role in heart health, digestive, and muscular function, bone health, and more.
While potassium is found in many foods commonly consumed in the U.S. — including fruits, vegetables, dairy products, salmon, sardines, and nuts — only 2 percent of U.S. adults get the recommended daily amount of 4,700 milligrams (mg).
This can be problematic because potassium needs to be kept in proper balance with sodium in your blood. If you consume too much sodium, which is common if you eat many processed foods, you’ll have an increased need for potassium. Others who are at particular risk of low potassium (hypokalemia) are those with chronic malabsorption syndromes, such as Crohn’s disease, or those taking heart medicine (particularly loop diuretics).
However, anyone who eats a poor diet — an excess of processed foods and not enough fresh, whole foods — is potentially at risk of inadequate potassium levels.
All of that said, if you have severe kidney impairment, you typically need to restrict your intake of high-potassium foods.14 Why? Because your kidneys are responsible for maintaining the proper amount of potassium in your body, and when they’re not working well, your levels could become excessively elevated.
Potassium helps maintain a regular heart rhythm and plays a role in muscle function, and when your potassium level gets too high, it can lead to irregular heartbeat and/or a heart attack.
If your kidneys are working well, the recommended amount of potassium is about 4,700 mg per day,15 which also needs to be balanced with sodium. As a general rule, your potassium to sodium ratio should be around 5:1. The easiest way to achieve this ratio is to eat REAL food (lots of fresh vegetables), ideally organically and locally grown to ensure optimal nutrient content.
This type of whole food diet will naturally provide much larger amounts of potassium in relation to sodium, whereas a processed food diet is virtually guaranteed to provide you with an upside-down ratio. Juicing your vegetables is a good way to ensure you’re getting enough potassium.
If you have kidney disease, you need to pay careful attention to your potassium level and dietary intake. Most who are being treated for kidney disease will monitor their potassium level by measuring it monthly, and potassium- restricted diets typically recommend keeping potassium intake to about 2,000 mg per day.
Besides monitoring your protein and sugar/fructose intake and drinking plenty of water, adding the following foods to your diet can also help promote optimal kidney function.16,17,18,19,20
| Red bell peppers: low in potassium, rich in vitamins A, B6, C, folic acid and fiber | Cherries: rich in antioxidants and phytochemicals |
| Cabbage: low in potassium, rich in vitamins C and K, and fiber, and phytochemicals that protect against free radical damage | Red and purple grapes: rich in antioxidants; the skin is particularly rich in resveratrol |
| Cauliflower: high in vitamin C, folate and fiber | Watermelon: rich in water, with diuretic properties, allowing you to produce more urine to flush out toxins |
| Garlic: antioxidant, anti-inflammatory, and anti-clotting properties | Lemon juice: helps reduce kidney stone formation |
| Onion: low in potassium, rich in antioxidants, particularly quercetin, which has natural antihistamine properties | Pumpkin seeds: rich in antioxidants, vitamins and minerals, especially magnesium, which helps reduce the risk of kidney stones |
| Apples: high in fiber, antioxidants, and anti- inflammatory compounds. Raw organic apple cider vinegar is helpful for the prevention of kidney stones | Kale: lower in potassium, good source of vitamins A and C, rich in iron — the latter of which is important for kidney health. Many with kidney disease are also iron deficient21 |
| Berries,22 including blueberries, raspberries, and strawberries | Sweet potatoes: rich in beta-carotene, vitamins A and C, and fiber, and a good source of B6 and potassium |
A number of herbs also have kidney-cleansing properties, including the following:
| Ginger: purifies the blood and kidneys of toxins | Red clover: diuretic that stimulates waste removal from the kidneys |
| Turmeric: has antiseptic and anti-inflammatory properties that help prevent and treat kidney infections and inflammation | Chanca Piedra: Used in South America to break up kidney stones (its Spanish name actually means “stone breaker”) |
| Dandelion: a natural diuretic that helps strengthen the kidneys and soothe urinary tract problems | Hydrangea root: Native American remedy for kidney stones |
| Nettle: natural diuretic that helps purify blood and treat urinary tract infections; also high in iron, making it beneficial for building blood | Uva ursi root: helps treat urinary and bladder problems |
| Marshmallow root: natural diuretic that helps treat urinary tract infections, kidney stones, and bladder infections | Gravel root (Joe-Pye weed): Indian remedy for urinary tract and kidney health |
| Juniper: improves kidney function and helps treat urinary tract infections and kidney and/or bladder stones.
Avoid juniper berry if you have a kidney infection and/or are pregnant. Also don’t take continuously for more than four weeks |
Goldenrod root: Native American remedy traditionally used to support urinary tract and kidney health |
| Yarrow root: a natural diuretic with antiseptic and anti-inflammatory properties; helpful for urinary tract infections |
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Time to reenter the real world, but Qatar 2022 isn’t far off.
District residents should mobilize to fight anti-home-rule riders in the 2019 D.C. appropriations bill.
For many species, we’re already past the point of no return.
But by all means let’s hear more about the affair.
Trump seems unaware that he may be seen as rewarding Vladimir Putin for bad behavior.
China can fight back in the trade war even without tariffs.
If Trump isn’t bluffing on NATO, it’s time for Europe to consider alternatives.
A bad deal would worsen conditions for the Syrian people, the region and America’s security.
In our thin-skinned culture, no utterance goes unchallenged.
The policy means some of these kids will never again see their parents.
The president’s Supreme Court nominee is fair-minded and unfailingly decent.
The country — and all its leaders — must recognize that the Russian government meddled in the nation’s democratic process and plans to do so again.
The government missed a deadline to reunite small children with their parents. Now comes a much tougher deadline.
Peter Strzok’s testimony also pokes huge holes in the idea that he and others worked to upend the president’s election campaign.
“Are you all right?” I asked the old woman. What happens when family, community and government fail you.
The alliance was meant to contain a powerful, destructive force. The president risks unleashing it.
A tail gunner was the sole survivor of the crash of his Flying Fortress during World War II. On the 75th anniversary, the families gather to honor his comrades and their own.
John went into the Capital Gazette on a Thursday. The rest is a daze.
Past presidents avoided constitutional battles to protect the rule of law. Would Trump?
NATO needs to change, but disparaging our allies won’t do it.
Another meeting with allies, another emergency caused by the U.S. president’s behavior.
Laws, rules and regulations developed without input from people with disabilities often end up penalizing us.
Many economists argue that automation is the reason for job losses in manufacturing. Here’s why they’re wrong.
No, the justices don’t always have the final word.
The alliance was meant to contain a powerful, destructive force. The president risks unleashing it.
John went into the Capital Gazette on a Thursday. The rest is a daze.
Past presidents avoided constitutional battles to protect the rule of law. Would Trump?
Expecting moms are turning to the Internet for issues they can’t or won’t discuss with their doctors.
The experience can be harrowing, even when you know what you’re doing
Why did producer George Martin actually take on the band? As punishment.
My millennial students are on to something.
Virginia Republicans don’t believe government should be closest to the people.
An annual festival at Kenilworth reminds me of my great hypothetical failure.
A recent Supreme Court ruling doesn’t address an inherent unfairness.
It’s the area’s paper of record. That’s why the attack last month feels so personal.


The allegations of subverting American democracy are troubling in themselves. They also spell trouble for the president.
By NORMAN L. EISEN and NOAH BOOKBINDER


If he is confirmed for the Supreme Court, we will see the most extreme court on civil rights since the era of Jim Crow.
By ARI BERMAN
For years, I fell asleep with one child and woke up with the other. It wasn’t just for them. It was also for me, after the trauma of divorce.
By LARA BAZELON

A reader calls the Republican attacks on Peter Strzok “more of a ‘witch hunt’ than anything in the special counsel’s investigation.”

A reader expresses his shame at the historical violence against blacks in his native Deep South.

A doctor offers a word of caution.

The university’s dean of admissions and financial aid takes issue with an essay by David Leonhardt.

Readers are mostly appalled by the president’s behavior. One calls on our allies to “have the guts to finally stand up to the president.”

In 1942, my mother, her parents and her sister were sent to an internment camp by the U.S. government. I worry that history is repeating itself.
By MICHIKO KAKUTANI

The other members of this outdated idea of family couldn’t care less.
By MICHAEL KENNY and NICK PEARCE

The Novichok poisonings in Britain show that President Trump needs to push his Russian counterpart to comply with the Chemical Weapons Convention it signed.
By DAVID WISE

The social media site revealed that it gave a Kremlin-linked company access to years of user data. You are right to be scared.
By SIVA VAIDHYANATHAN

That vitamin C, an anti-oxidant agent, boosts and strengthens immunity is well known. Its ability to speed-up recovery from tuberculosis and impede the TB causing bacteria from causing disease, and even kill the bacteria in culture at high concentration are also known. Now, a study by a team of researchers at the Indian Institute of Science (IISc), Bengaluru has found the molecular mechanism by which vitamin C impedes and even kills Mycobacterium smegmatis, a non-pathogenic bacterium that belongs to the same genus as the TB-causing mycobacteria. The results were published in the journal FEMS Microbiology Letters.
During times of stress or hostile conditions, such as increased temperature and presence of antibiotics, bacteria tend to come together and form a biofilm to protect themselves. The stress response pathway is crucial for bacteria to survive during hostile conditions. So blocking this pathway is a sure way of killing the bacteria.
In mycobacterium, the (p)ppGpp (Guanosine pentaphospahte or Guanosine tetraphosphate) is a key molecule in the stress response pathway. The (p)ppGpp is synthesised by Rel protein, which in turn is made by the Rel gene.
The team led by Dipankar Chatterji from the Molecular Biophysics Unit at IISc looked at the effects of vitamin C on the stress response pathway. “We chose vitamin C because its structure is similar to (p)ppGpp,” says Prof. Chatterji. “So we hypothesised that vitamin C should be competing to bind to the Rel enzyme and inhibiting (p)ppGpp synthesis.”
To test their hypothesis, the researchers conducted experiments using M. smegmatis. M. smegmatis is used as a model organism for TB-causing Mycobacterium tuberculosis.
In vitro studies showed “significant” inhibition of (p)ppGpp synthesis in the presence of vitamin C. The inhibition level was seen to increase as the vitamin C concentration increased. The more the vitamin C concentration, the greater the possibility of vitamin C binding to the Rel enzyme, thus inhibiting (p)ppGpp synthesis. At about 10 mM concentration, the synthesis of (p)ppGpp molecule was completely inhibited.
The binding of vitamin C to the Rel enzyme is weak and this explains why high concentration of vitamin C is needed to inhibit (p)ppGpp synthesis.
“Using Mycobacterial cells we found that 1 mM of vitamin C produced 50% inhibition in (p)ppGpp synthesis. Vitamin C is able to get inside cells and inhibit (p)ppGpp synthesis,” says Kirtimaan Syal from IISc, the first author of the paper.
When 2 mM of vitamin C was added, “significant” defect in biofilm formation was seen. There was more than 50% reduction in viability of cells in a matter of four days when M. smegmatis was treated with 2mM of vitamin C. The viability of cells reduced even further with time, raising the possibility of therapeutic implications.
In the early literature, vitamin C deficiency was associated with pneumonia. After its identification, a number of studies investigated the effects of vitamin C on diverse infections. A total of 148 animal studies indicated that vitamin C may alleviate or prevent infections caused by bacteria, viruses, and protozoa. The most extensively studied human infection is the common cold. Vitamin C administration does not decrease the average incidence of colds in the general population, yet it halved the number of colds in physically active people. Regularly administered vitamin C has shortened the duration of colds, indicating a biological effect. However, the role of vitamin C in common cold treatment is unclear. Two controlled trials found a statistically significant dose–response, for the duration of common cold symptoms, with up to 6–8 g/day of vitamin C. Thus, the negative findings of some therapeutic common cold studies might be explained by the low doses of 3–4 g/day of vitamin C. Three controlled trials found that vitamin C prevented pneumonia. Two controlled trials found a treatment benefit of vitamin C for pneumonia patients. One controlled trial reported treatment benefits for tetanus patients. The effects of vitamin C against infections should be investigated further.
Vitamin C levels in white blood cells are tens of times higher than in plasma, which may indicate functional roles of the vitamin in these immune system cells. Vitamin C has been shown to affect the functions of phagocytes, production of interferon, replication of viruses, and maturation of T-lymphocytes, etc. in laboratory studies [1,23,42,43,44]. Some of the effects of vitamin C on the immune system may be non-specific and in some cases other antioxidants had similar effects.
Biochemistry textbooks usually mention the role of vitamin C in collagen hydroxylation. However, the survival time of vitamin C deficient guinea pigs was extended by carnitine [45] and by glutathione [46], which indicates that scurvy is not solely explained by defects in collagen hydroxylation, and it is not clear whether hydroxylation is important at all in explaining scurvy [6]. Vitamin C participates in the enzymatic synthesis of dopamine, carnitine, a number of neuroendocrine peptides, etc. [6,47,48,49,50]. Vitamin C is also a powerful antioxidant, as mentioned above.
Experimentally induced vitamin C deficiency leads to depression and fatigue [11,51]. Recently, vitamin C was reported to improve the mood of acutely hospitalized patients [52,53]. Such effects cannot be explained by collagen metabolism, and vitamin C effects on the immune system are not plausible explanations either. Instead, the effects of vitamin C on the neuroendocrine system or carnitine metabolism might explain such effects. Thus, if vitamin C has beneficial effects on patients with infections, that does not unambiguously indicate that these effects are mediated by the immune system per se.
It is quite a common assumption that the effects of vitamins are uniform. Thus, if there is benefit, it is often assumed that the same benefit applies to all people. However, it seems much more likely that the effects of vitamins, including vitamin C, vary between people depending on biology and their lifestyle. Thus, it is possible that there are benefits (or harms) restricted to special conditions or to particular people. In the case of vitamin E, there is very strong evidence for the heterogeneity in its effects on pneumonia [54,55] and on the common cold [56]. Although the factors modifying the effects of vitamin E cannot be extrapolated to vitamin C, it seems probable that there is comparable heterogeneity in the effects of vitamin C.
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Luckily, all foods contain a little protein, and a large variety of plant-based foods provide many of the essential amino acids once believed to only exist within animal-based foods. Essential amino acids are amino acids that are the building blocks of protein that our body can’t produce by itself. In other words, if we don’t eat them, we won’t get enough of them. But steak, beef, chicken, eggs, pork, and milk are not the only sources of essential amino acids; plants have plenty of them our bodies can use the same way.
Out of the 22 amino acids that exist, nine are essential and 11 are non-essential. Below are a list of the nine essential amino acids and plant-based foods that are good sources of each. Some sources of amino acids, like chia and hemp seeds, also offer all essential amino acids, making them a complete protein, though remember that all plant-based foods can form complete proteins within the body once ingested.
Here’s what each essential amino acid does and where to find it:
Leucine is one of the best essential amino acids for stimulating muscle strength and growth, and also referred to as a BCAA (brand-chain amino acid). Leucine helps regulate your blood sugar by moderating insulin into the body during and after exercise and can even help prevent and treat depression by the way it acts on neurotransmitters in the brain.
Good plant-based sources include: seaweed, pumpkin, peas and pea protein, whole grain rice, sesame seeds, watercress, turnip greens, soy, sunflower seeds, kidney beans, figs, avocados, raisins, dates, apples, blueberries, olives and even bananas. Don’t limit yourself to one food of these choices, and aim for a serving of either seaweed, leafy greens, hemp seeds, chia seeds, grains, legumes, seeds, or beans at each meal to be sure you get enough high-quality plant protein.
Isoleucine is another BCAA similar to leucine, however with a few different responsibilities. It is an isolated form of leucine that specifically helps the body produce energy and hemoglobin. It’s also vital assisting in nitrogren growth within the muscle cells, especially in children.
Plant-based sources include: rye, soy, cashews, almonds, oats, lentils, beans, brown rice, cabbage, hemp seeds, chia seeds, spinach, pumpkin, pumpkin seeds, sunflower seeds, sesame seeds, cranberries, quinoa, blueberries, apples, and kiwis.
Isoleucine is another BCAA similar to leucine, however with a few different responsibilities. It is an isolated form of leucine that specifically helps the body produce energy and hemoglobin. It’s also vital assisting in nitrogren growth within the muscle cells, especially in children.Plant-based sources include: rye, soy, cashews, almonds, oats, lentils, beans, brown rice, cabbage, hemp seeds, chia seeds, spinach, pumpkin, pumpkin seeds, sunflower seeds, sesame seeds, cranberries, quinoa, blueberries, apples, and kiwis.
Lysine is responsible for proper growth and in the production of carnitine (a nutrient responsible for converting fatty acids into fuel to lower cholesterol). It also helps the body absorb calcium for even further bone strength and also aids in collagen production. It’s vital to get enough of this amino acid since deficiency can lead to nausea, depression, fatigue, muscle depletion and even osteoporosis. Good plant-based sources of lysine include: beans (the best), watercress, hemp seeds, chia seeds, spirulina, parsley, avocados, soy protein, almonds, cashews, and some legumes with lentils and chickpeas being two of the best.
Methionine helps form cartilage in the body through the use of sulfur. Sulfur is a mineral essential to the production of bone cartilage and no other amino acids contain sulfur aside from methionine. People who don’t eat enough sulfur-containing foods to produce methionine in the body may suffer arthritis, damaged tissue, and poor healing. Methionine also aids in the production of muscle growth and formation of creatine, needed for optimal cellular energy.
Good plant-based sources of sulfur include: sunflower seed butter and sunflower seeds, hemp seeds, chia seeds, Brazil nuts, oats, seaweed, wheat, figs, whole grain rice, beans, legumes, onions, cacao, and raisins.
This amino acid comes in three forms: L-phenalynaline (a natural form found in protein) and D-phenalynaline (a form produced by a laboratory), and DL phenalynaline (a combination of both forms). Always eat food-based sources before choosing supplements or enriched food products with a lab-derived version of this amino acid. Phenylalanine is important in the body because it turns into tyrosine once ingested, which is another amino acid that’s needed to make proteins, brain chemicals, and thyroid hormones. Not obtaining enough of this amino acid can result in brain fog, lack of energy, depression, lack of appetite, or memory problems.Good sources include: spirulina and other seaweed, pumpkin, beans, rice, avocado, almonds, peanuts, quinoa, figs, raisins, leafy greens, most berries, olives, and seeds.
Threonine supports a healthy immune system, heart, liver, and central nervous system health. It also helps maintain a balance of proteins within the body to assist in overall repair, energy, and growth. This amino acid also helps the body’s connective tissues and joints in good health by producing glycine and serine in the body, two essential amino acids needed for healthy bones, skin, hair, and nails. In the liver it helps with fatty acid digestion to prevent fatty acid build-up and liver failure.The highest sources of this amino acid are: watercress and spirulina (which even exceed meat), pumpkin, leafy greens, hemp seeds, chia seeds, soybeans, sesame seeds, sunflower seeds and sunflower butter, almonds, avocados, figs, raisins, quinoa, and wheat . Sprouted grains are also excellent sources of this amino acid as well.7.
Known as the relaxing amino acid, tryptophan is vital to a healthy nervous system and brain health, along with sleep, muscle growth and repair, and overall neurotransmitter function. It’s one of the most prominent amino acids found in turkey, milk, and cheese that cause those foods to make you feel sleepy and relaxed. Tryptophan also converts to serotonin once in the brain, which creates a happy feeling tied to lower levels of stress and depression. It’s best not to consume milk and cheese sources (or turkey) for your tryptophan content whenever you get the chance. Animal foods promote inflammation and there are tons of plant-based sources you can choose instead.
Plant-based sources that include high amounts of tryptophan include: oats and oat bran, seaweed, hemp seeds, chia seeds, spinach, watercress, soybeans, pumpkin, sweet potatoes, parsley, beans, beats, asparagus, mushrooms, all lettuces, leafy greens, beans, avocado, figs, winter squash, celery, peppers, carrots, chickpeas, onions, apples, oranges, bananas, quinoa, lentils, and peas.
Valine is another BCAA needed for optimal muscle growth and repair. It’s also responsible for endurance and the overall maintenance of good muscle health.
High sources of valine include: beans, spinach, legumes, broccoli, sesame seeds, hemp seeds, chia seeds, soy, peanuts, whole grains, figs, avocado, apples, sprouted grains and seeds, blueberries, cranberries, oranges, and apricots.
This amino acid helps transport neurotransmitters (chemical messengers) to the brain and also helps overall muscle health within each muscle cells. It even helps detoxify the body by producing red and white blood cells needed for overall health and immunity. Not obtaining enough histidine can result in arthritis, sexual disfunction, and even deafness. It can also make the body more susceptible to the AIDS virus.
Good plant-based sources of histidine include: rice, wheat, rye, seaweed, beans, legumes, cantaloupe, hemp seeds, chia seeds, buckwheat, potatoes, cauliflower and corn.
So how much protein do you need? Everyone is different depending on their training goals or overall lifestyle goals. If you’re eating a vegan diet, use this handy online calculator to see how much is enough and to find out the best sources and see the Vegetarian Resource Group for more information on protein in a vegan diet.
Overall, eating a wide variety of whole, plant-based foods will provide you with all the essential amino acids your body needs for optimal growth, repair, and health. Feel free to make your own vegan protein bars, and even skip those store bought protein powders by making your own at home. Getting protein in a vegan diet is versatile and easy, so take advantage of these foods however you can.
How do axons grow during development, and why do they fail to regrow when injured? In the complicated mesh of our nervous system, the axon is the information superhighway, carrying all of the data we use to sense our environment and carry out behaviors. To wire up our nervous system properly, neurons must elongate their axons during development to reach their targets. This is no simple task, however. The complex morphology of axons and dendrites puts neurons among the most intricate and beautiful cells in the body.
Knowledge of how neurons extend axons and dendrites, elongate at a particular rate, and stop growing at the proper time is critical to understanding the development of our nervous system, yet the regulation of these processes is poorly understood. Considerable attention in recent years has focused on understanding how growth cones are guided and steered through complicated pathways (for review, see Schmidt and Hall 1998; Mueller 1999), and even how neurons initiate new processes (for review, see Da Silva and Dotti 2002), but what mechanisms are involved in elongation itself? Are environmental signals needed to drive axon growth and, if so, what are the intracellular molecular mechanisms by which they induce elongation? What controls the rate of axon growth? How do CNS neurons know whether to extend axons or dendrites? Is the signaling of axon versus dendrite growth attributable to different extracellular signals, different neuronal states, or both? All of these questions bear critically on our understanding of axon growth and here I review recent answers and approaches to the above questions, and highlight their relevance during development, injury, and disease.
Axons are generally on the scale of 1 μm thick and some are more than 1 m long, making neurons the largest cells in the body by both volume and surface area. Sustaining such massive growth, however, requires the interplay of many factors—producing membrane and cytoplasmic elements in the proper proportions; shipping these building blocks to the right compartment and inserting them into the growing axon; and coordinating the timing of all of these with the growth cone’s moment-by-moment decisions to advance, retract, pause, or turn (Fig. 1). All of these are potential regulatory sites that could control a neuron’s ability to elongate or regenerate its axon.
Axon growth, like an automobile, requires (A) the supply of building blocks (gasoline); as well as (B) cycling filaments in the growth cone (the running motor); (C) connections between growth cone filaments and the growth substrate (the clutch); and (D) a way to translate external, directional cues into pathfinding decisions (the steering wheel). Steps forward in our understanding of these processes and their regulation are the subjects of this review.
Rapid axon growth requires rapid manufacture and supply of cytoplasm and membrane. Where are the lipid and protein building blocks made? It was known from classic experiments that axons cut off from the cell bodies of adult sensory neurons continue to elongate in culture (Shaw and Bray 1977), but evidence for local production of membrane and cytoplasmic elements went lacking for decades. Secreted proteins, both transmembrane and extracellular, as well as glycolipids are likely synthesized at the cell body, where the rough endoplasmic reticulum (ER) and golgi complex are located, and shipped in vesicles down the axon for membrane insertion. What about other lipids? Blocking lipid synthesis interferes with axon growth (Posse de Chaves et al. 1995a,b), although it is not clear how much this represents dependence on supply from the cell body or from the axon.
Smooth ER is located throughout the axon, however, and experiments using radioactive lipid precursors added to axons but not to the cell bodies of neurons either in compartmented cultures (Fig. 3, below) or in vivo show that at least some lipid synthesis can occur in axons (Gould et al. 1987a,b; Vance et al. 1991, 1994; Posse de Chaves et al. 1995b).
Similarly, experiments in sympathetic neurons demonstrate that the cell body is responsible for cholesterol synthesis, but if synthesis is insufficient or is blocked pharmacologically, both the cell body and axons can take up cholesterol from high-density and low-density lipoproteins, locally gathering needed material from an external source (Vance et al. 1994;Posse de Chaves et al. 1997, 2000). From these various experiments it appears that the major burden of producing plasma membrane must fall to the cell body, but it may be that longer axons in vivo rely more heavily on local, axonal production of these building blocks.
Campenot chambers have proven invaluable in dissecting the functions important to axons from those important to the cell body. In these experiments, a wall separates the culture dish into two or more compartments, and although the axons can grow under the wall into the distal compartment, the contents of the culture media do not diffuse from one side to the other. In this way, factors can be added exclusively to the axons or cell bodies to the exclusion of the other.
For example, in the classic experiments dissociating cellular survival from axon growth, neurotrophins such as NGF added to the axon or cell body compartments support neuronal survival, but the neurotrophin must be added specifically to the axon compartment to support the survival and growth of the axons themselves (see text).
The axonal localization of specific mRNAs raises the question, is there any physiologic contribution made by these mRNAs? Recent experiments suggest that they are not there by accident. In adult dorsal root ganglion (DRG) neurons in vitro, blocking axonal protein synthesis causes growth cones to retract, but only when the axons are cut off from the cell body. These experiments suggest that axonal translation is sufficient to maintain the growth cone, at least over short periods of time, but that axonal translation is not necessary if cell body-mediated protein synthesis is available (Zheng et al. 2001). Embryonic Xenopus retinal axons cut off from their cell bodies can elongate and turn in vivo (Harris et al. 1987) and in vitro in response to guidance cues (Campbell and Holt 2001). After adding protein synthesis inhibitors, they fail to respond to steering cues from soluble guidance molecules netrin-1 or Sema3a (Campbell and Holt 2001). All of these data are consistent with the hypothesis that axonal protein synthesis is constantly required to resensitize the growth cone to guidance cues; without axonal protein synthesis the growth cone otherwise adapts and stops responding (Ming et al. 2002).
In studies of Xenopus neurons in culture, which exhibit a presynaptic potentiation in response to the soluble trophic factor brain-derived neurotrophic factor (BDNF), blocking protein synthesis for 45 min before BDNF application had no effect, but a 2-h blockade completely eliminated the presynaptic response to BDNF. This led the authors to hypothesize that protein synthesis in the axon terminals may not be specifically induced by BDNF, but rather that constitutive ongoing protein synthesis is required for the response to BDNF (Zhang and Poo 2002).
The specific induction of protein synthesis in axons was demonstrated beautifully using chick spinal cord axons, which normally up-regulate axonal expression of the EphA2 guidance receptor after crossing the midline (Brittis et al. 2002). An RNA reporter construct consisting of green fluorescent protein (GFP) RNA followed by the 3′ untranslated region (UTR) of EphA2 RNA was transfected into these neurons using electroporation. Brittis and colleagues (2002) found that GFP expression was specifically up-regulated in the distal axons and growth cones of these spinal neurons only after the axons crossed the midline, suggesting that a local protein synthesis mechanism was being activated in response to extracellular cues and was mediated by the EphA2 3′UTR sequence (Brittis et al. 2002). These experiments provided evidence that localized protein synthesis is critical to rejuvenating and changing the growth cone’s responsiveness to various environmental signals.
Although in the presence of the connected cell body axonal protein synthesis may not be necessary for growth, these experiments point to a physiologic role for local protein synthesis. Could local protein synthesis also have a role in axon elongation or regeneration? The response to axonal injury may include an initial period wherein axonal synthesis may be crucial to maintaining the growth cone to allow the cell body time to jumpstart into regeneration mode. Support for this hypothesis comes from studies of crushed peripheral nerves regenerating into silicone sleeves loaded with the translational inhibitor cycloheximide, which inhibited elongation rates by nearly 60% (Gaete et al. 1998). Despite such promising data, questions remain: is axonal protein synthesis physiological during development, and is its regulation critical for regeneration in the adult?
Membrane insertion is critical for axon growth, as blocking the transport of membrane vesicles rapidly brings axon growth to a halt (Klausner et al. 1992; Martenson et al. 1993). Yet the identification of where new membrane is inserted is still the subject of debate—is it preferentially at the growth cone, the cell body, or all along the axon? Visualization of fluorescent vesicles leaving the cell body inXenopus neurons in culture suggests insertion at the growth cone (Zakharenko and Popov 1998), and transfecting an exogenous gene into cultured rat hippocampal neurons similarly demonstrated insertion of the newly synthesized proteins at the growth cone first (Craig et al. 1995). On the other hand, in vivo metabolic labeling studies suggest that certain proteins and lipids are inserted all along the axon (Griffin et al. 1981; Toews et al. 1988; Harel and Futerman 1996), and physically stretching the axon leads to remarkably rapid axon elongation and new membrane insertion along its length (Zheng et al. 1991). Axon stretching may be relevant after the growth cone has reached its target during development but the axon continues to elongate as the animal grows. Both pan-axonal and growth cone-specific insertion could be important. For example, rapidly extending growth cones could mimic such stretching by producing tension along the axon, thereby inducing membrane insertion all along the axon, whereas a slowly extending growth cone might only allow membrane insertion at the growth cone itself (Futerman and Banker 1996). In addition, insertion of different vesicle subsets could be preferentially inserted along the axon and at the growth cone, reflecting the need for different membrane components and different signaling receptors in each compartment. Therefore production and shipping of these basic building blocks is clearly critical to axon elongation, but the regulation of these processes remains mysterious.
Better studied in recent years is the growth cone, the mobile tip of the axon specialized for elongation and steering, and the molecular mechanism of growth cone mobility can be described as the motor and clutch of axon elongation (Fig. 1; Mitchison and Kirschner 1988). The growth cone is responsible for generating forward tension on the elongating axon (Lamoureux et al. 1997). Neuronal growth cones exhibit two primary domains characterized by two different types of cytoskeletal filaments: a central domain with microtubules that is generally continuous with the axon that precedes it, and a peripheral domain rich in actin filaments (Fig. 2). Actin monomers in the peripheral domain undergo constitutive plus end-directed filament assembly, elongating the filament in the distal tips of lamellipodia and filopodia and pushing the growth cone membrane in the forward direction; simultaneously the entire actin filament is dragged back by myosin-like molecular motors into the central domain where the actin filaments depolymerize (Forscher and Smith 1988; Tanaka and Sabry 1995; Mitchison and Cramer 1996). At the tail end of these actin filaments, the myosin-mediated retrograde flow blocks microtubules from advancing into the peripheral domain, and blocks the advance of the growth cone’s central domain and therefore of the axon itself (Forscher and Smith 1988). The balance of anterograde polymerization and retrograde retraction determines the advance of these actin-rich structures in the peripheral domain; for example, blocking myosin activity causes filopodial elongation (Lin et al. 1996). When the rate of these two processes balance perfectly, the motor sits in neutral, and the growth cone neither advances nor retracts. This is the running motor of axon elongation, waiting to be engaged.
In the peripheral domain, including in the actin-rich filopodia and lamellipodia, actin filaments polymerize toward the leading edge (A) but are dragged back toward the central domain by myosin-like motors (B), leading to a balanced equilibrium of no net progress. In addition, retrograde flow keeps the microtubules from penetrating into the peripheral domain (B). Signals from surface receptors bound to ligands, such as adhesive substrates (C), suppress the retrograde flow of actin filaments, and the balance shifts toward polymerization-driven forward progress of actin filaments (D). In addition, the lack of retrograde flow allows microtubule polymerization to proceed into the peripheral domain (E), extending the axon itself forward.
How is this running motor engaged by extracellular signals to advance? The growth cone’s grasp on an adhesive substrate must translate across the membrane and evoke the cytoskeletal changes needed for axonal growth. Work on a molecular model for engaging the clutch and letting the running motor push the growth cone forward has seen rapid progress (Suter and Forscher 2000). When the growth cone interacts with a substrate or cell-adhesion molecule, an increasingly strong connection is formed between the growth cone’s surface receptors and the underlying actin network—the molecular clutch is engaged. The localization of extracellular adhesions to specific subdomains of the growth cone may dictate how the adhesion signal is interpreted—for example, for filopodial growth versus axon growth (Steketee and Tosney 2002). The link from membrane adhesion to actin cytoskeleton is sufficient to overcome the force created by myosin motors and retrograde flow is thereby decreased (Suter et al. 1998). As actin polymerization continues at the leading edge, however, the balance is shifted toward forward protrusion of actin filaments in the tips of lamellipodia and filopodia. Simultaneously, the decrease in retrograde flow is accompanied by unimpeded microtubule polymerization into the peripheral domain, moving the central domain of the growth cone forward and thereby elongating the axon (Lin and Forscher 1995). One question raised by this model is whether axon growth speed is regulated by one aspect of these dynamics, for example by varying the rate of retrograde flow, the tendency toward actin filament polymerization, or the strength of clutch engagement.
A crucial question is how interactions at the plasma membrane are communicated to the cytoskeleton. Therefore, much recent effort has gone into characterizing the control of actin activity in the growth cone, or in the analogous lamellipodia and filopodia of migrating cells. Various receptor families including integrins, catenins, and cadherins recruit specific linker proteins to transduce signals from the membrane to the cytoskeleton, and these linker proteins are critical both for binding the cytoskeleton directly, as well as to initiate cascades of cellular kinases that can amplify and diversify the signal. For example, integrin receptors bind integrin-linked kinase (ILK), a multifunctional protein that is able both to recruit other adaptor and scaffolding proteins to the sites of cell adhesions and thereby bind actin filaments, and to simultaneously phosphorylate other signaling proteins like protein kinase B and GSK-3 (for review, see Wu and Dedhar 2001).
Slightly downstream of membrane receptors and their associated signaling components are the rho-GTPases, a family of regulators of actin motility, intensively studied for the critical role they have in axon guidance as well as axon initiation and elongation. Because their role in axon guidance has received excellent review in recent years, discussion here will remain brief (Schmidt and Hall 1998; Mueller 1999;Braga 2002). The rho-GTPases and the effector kinases they activate have been linked directly to growth cone motility by virtue of their effects on myosin contractility and retrograde actin flow, and on actin polymerization and stabilization. Rho, rac, and cdc42 GTPases are active when bound to GTP, and inactive after hydrolyzing GTP to GDP, and therefore are activated by guanine nucleotide exchange factors (GEFs) and and more quickly inactivated by GTPase-activating proteins (GAPs). In its active state, rho generally promotes growth cone collapse, and inhibiting rho generally leads to an increase in neurite outgrowth; conversely the rac and cdc42 generally increase the filopodial and lamellipodial activity important for elongation. The GEFs and GAPs, as well as the effector kinases downstream of these GTPases are likely responsible for the specificities of their effects on axon initiation, elongation, and guidance (Patel and Van Vactor 2002). For example, inhibiting rhoA in cerebellar granule neurons with the C3 enzyme leads to an increase in axon initiation and elongation; inhibiting a rhoA effector kinase p160ROCK leads to an increase in axon initiation without affecting elongation (Bito et al. 2000). These effects correlate with alterations in motility at the growth cone, supporting the hypothesis that much of the regulation of axon growth is carried out there. The interplay between these growth cone dynamics and the rest of the cellular processes necessary for axon growth are just beginning to be appreciated.
Downstream of the rho-family GTPases and their effector kinases, numerous actin-binding proteins have been identified in growth cones and found to be modulators or effectors of axon growth. Enhancing plus-end actin polymerization, decreasing retrograde actin flow, and enhancing minus-end actin depolymerization could all contribute to increased rates of axon elongation, and regulation of proteins with all three of these mechanisms have been found to influence axon growth. For example, the actin monomer-binding protein profilin can enhance actin polymerization, and is recruited to the leading edge of growth cones by the Enabled family of proteins including Mena, which themselves are target substrates of such tyrosine kinases as Abl. Knockouts of these genes in Drosophila and in mice interfere with axon growth and pathfinding (Lanier et al. 1999; Wills et al. 1999a,b). At the transitional zone between actin tails and microtubules, the actin filament-severing protein gelsolin and the filament depolymerizing family of ADF/cofilin proteins increase actin turnover. Growth cones from gelsolin knockout mice fail to retract their filipodia (Lu et al. 1997), and ADF/cofilin activation increases neurite outgrowth (Meberg et al. 1998). Another actin monomer-binding protein, β-thymosin, is enriched in growth cones and is up-regulated in regenerating zebrafish RGCs (Roth et al. 1999). An important area for further research is to understand the exact functional roles of these actin-binding proteins, and how they are coordinately regulated to elicit axon growth.
Actin is not responsible for all the action, however. Microtubules and microtubule-associated proteins (MAPs) are thought to be critical for axon and dendrite growth. In growth cones, microtubules can be directly stimulated to polymerize forward into the peripheral domain independently of decreases in retrograde actin flow (Kabir et al. 2001), and cell adhesion molecules can also signal changes in microtubule stability through a variety of signaling pathways (for review, see Braga 2002). Microtubule destabilization is required for the insertion of new membrane in the growth cone (Zakharenko and Popov 1998). MAPs, most of which are thought to promote and stabilize microtubule polymerization, are key players as well. Knocking out dendritic MAP2 decreases dendritic growth in vivo (Harada et al. 2002), and decreasing expression of the MAP tau in at least some experiments inhibits axon outgrowth and decreases the size and motility of the growth cone (Liu et al. 1999). The regulation of tau by differential phosphorylation may be critical to its role in stabilizing or destabilizing microtubules as needed along the axon or at the growth cone, respectively (Biernat et al. 2002). There may be significant redundancy in MAPs, as double knockouts of MAP2 and MAP1b and of tau and MAP1b appear to amplify these effects on dendrites and axons, respectively (DiTella et al. 1996; Takei et al. 2000; Teng et al. 2001). Another axonal MAP named collapsin response mediator protein-2 (CRMP-2) binds tubulin dimers and stimulates axon growth and branching in hippocampal neurons in culture (Fukata et al. 2002). Finally, microtubule motors such as dynein actively transport microtubules along the length of the axon, are required for axon growth, and may contribute to the microtubule invasion of growth cones during elongation (Ahmad et al. 1998). Together, these data support a role for active regulation of microtubule activity in the control of axon outgrowth.
The need for so many building blocks to sustain axon growth raises a question. Is the rate of axon growth limited by supply of these molecules? If cell body-dependent growth processes, including at a minimum the supply of mRNA for protein synthesis, are tightly tied to and limiting for axon growth, cutting off the supply should halt axon growth immediately. At the other extreme, if the axon does not rely at all on the cell body, axon growth might proceed indefinitely. In the experiments discussed above in which axons were cut off from their cell bodies, the axons continued to progress at approximately their previous rate (Campbell and Holt 2001). The experiment was only maintained over the course of a few hours, and the authors did not address whether the length of axon immediately after it was cut predicted the length of time it could continue to extend, but the results suggest that cellular growth is not an immediately limiting factor for axon growth. Similarly, inhibiting protein or lipid synthesis does not inhibit axon growth on the scale of hours (Lein and Higgins 1991; Posse de Chaves et al. 1995b; Schwarz et al. 1995; Harel and Futerman 1996). In other experiments analyzing sensory neurons with multiple neurites, the activity of the multiple growth cones remained completely independent—fast growth of one neurite was not compensated for by slower elongation or retraction of the other neurites. Furthermore, other neurites did not slow even when mechanical tension was applied to stimulate even faster growth from one neurite (Lamoureux et al. 1998). These data may differ when two branches of the same axon are challenged to compete, as has been observed in hippocampal neurons in culture (Ruthel and Hollenbeck 2000), or in an aplysia neuron when an appropriate target cell is present (Goldberg and Schacher 1987).
Another way to elongate, or increase in volume, without adding cell mass is to regulate cytoplasmic density. For example, as axon diameters grow, neurofilament packing density decreases (Hall et al. 2000), the likely result, at least in part of phosphorylation, increasing cell volume rapidly without increasing cell weight. A similar effect is seen during myelination of axons, where over a relatively short period axons increase in diameter, often doubling the volume of the cell (de Waegh et al. 1992; Starr et al. 1996). Whether a similar expansion in volume is possible along the longitudinal axis of the axon is currently unknown. Nonetheless, taken together these experiments suggest that cellular growth is providing sufficient oversupply to keep the axon in an elongating mode, and that growth cone procession is the limiting factor in axon growth.
Significant progress has been made in understanding the complex mechanisms of axon growth discussed above, but less well understood are their intricate regulation. First, do neurons extend axons constitutively or is axon growth specifically signaled? Because the same signals that induce axon growth are generally critical for neuronal survival, these two functions have been difficult to disentangle—remove putative axon growth signals in vitro or in vivo, and the neurons die. The development of genetic tools to block apoptosis in neurons has recently made it possible to address this question (Goldberg and Barres 2000). For example, in retinal ganglion cells (RGCs), a type of CNS neuron that can be purified and cultured in the complete absence of glial cells, elevating expression of the anti-apoptotic protein Bcl-2 maintains neuronal survival after all trophic signals are withdrawn (Goldberg et al. 2002a). Despite high levels of survival in the absence of exogenous signals, Bcl-2-overexpressing RGCs fail to elaborate axons or dendrites, unless axon growth-inducing signals (see below) were present, clearly demonstrating that axon growth is not a default function of a surviving neuron but must be specifically signaled (Goldberg et al. 2002a). A critical aspect of these experiments with RGCs involved the use of cultures at “clonal density,” less than five neurons per square millimeter, which prevented the RGCs from signaling each other with paracrine growth signals (Goldberg et al. 2002a). Peripheral neurons also have a similar requirement for extrinsic signaling of axon growth. For example, when developing dorsal root ganglion (DRG) sensory neurons from transgenic mice that lack the pro-apoptotic protein Bax are cultured in vitro, withdrawal of neurotrophic factors does not induce apoptosis (Lentz et al. 1999). These Bax−/− DRG sensory neurons grow rudimentary axons, but neurotrophins greatly increase axon out growth in vitro (Lentz et al. 1999). Even embryonic peripheral neurons that survive in culture without added trophic factors fail to extend neurites (Lindsay et al. 1985), and adult DRG neurons that do not appear to depend on neurotrophic factors for survival still respond to such factors by increasing axon outgrowth (Lindsay 1988). Taken together, these findings indicate that surviving neurons do not constitutively extend axons and that axon growth must be specifically signaled by extracellular signals.
A great variety of extracellular signals have been found to induce axon growth. The most potent signals are pep tide trophic factors. For instance, a family of peptide trophic factors called neurotrophins, which in mammals include nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), neurotrophin-3 (NT-3), and neurotrophin-4/5 (NT-4/5), has been studied intensively. Their widespread roles in regulating the developing and adult nervous system have been reviewed extensively (Bibel and Barde 2000). Different neurons are frequently responsive to different trophic factors, and multiple trophic factors can often combine to induce even greater axon growth. In DRG neurons, NGF and BDNF induce more axon growth than either alone (Lindsay et al. 1985); RGCs extend axons equally well in response to BDNF and ciliary neurotrophic factor (CNTF), but both together induce more axon growth than either alone (Goldberg et al. 2002a). Interestingly, in studies that dissociate survival from axon growth, the same peptides that most strongly promote cell survival are the same ones that most strongly promote axon growth. This is even more remarkable considering data suggesting that the survival and axon growth responses to trophic factors diverge inside the neuron, using different intracellular signaling pathways (see discussion below; Atwal et al. 2000; Goldberg et al. 2002a).
Are extracellular signals other than peptide trophic factors sufficient to induce axon elongation? Extracellular matrix molecules like laminin and heparin sulfate proteoglycans, and cell adhesion molecules like L1 and N-Cadherin are widely expressed (Reichardt and Tomaselli 1991;Lafont et al. 1992) and help promote axon growth in vitro and in vivo (Riehl et al. 1996). Their neuronal receptors, including various families of integrins (de Curtis and Reichardt 1993), receptor protein tyrosine phosphatases (for example, see Burden-Gulley and Brady-Kalnay 1999), and IgCAMs and cadherins themselves (for example, see Honjo et al. 2000), are also widely expressed during development but are often down-regulated in adult neurons. Although these signaling interactions can potentiate axon outgrowth in purified CNS neurons if soluble glial or peptide trophic signals are present, so far they do not appear to be sufficient to induce axon growth on their own (Goldberg et al. 2002a). Rather, it appears that they provide a critical substrate along which axons extend, as discussed above, thereby strongly potentiating axon outgrowth. Other adhesion and guidance molecules may also contribute to the signaling of axon elongation, for example as has been described for netrin-1 (Serafini et al. 1994), a well-described axon guidance molecule homologous to laminin. The N-terminal fragment of the guidance molecule slit2 may increase axon elongation in addition to having a better-described axon branching activity (Wang et al. 1999). As axon guidance molecules activate the same growth cone mechanisms discussed above, it is not surprising that their effects may overlap with effects on elongation as well. Finally, other extracellular signals as simple as purine nucleotides may be critical to induce axon growth, although the mechanism of this activity is still mysterious (Benowitz et al. 1998). Therefore peptide trophic factors appear to most strongly induce axon outgrowth, but adhesion molecules can greatly potentiate this growth, and molecules thought to be primarily involved in growth cone guidance may also have some elongation promoting activity.
Where do trophic peptides act—at the cell body, or on the axons themselves? Local application of neurotrophins to a growth cone is sufficient to enhance the rate of growth cone extension in vitro (Letourneau 1978) and in vivo (Tucker et al. 2001). The definitive answer, however, has come from experiments using Campenot chambers, a powerful technique in which neurons are cultured with their cell bodies in one compartment while their axons grow under a wall into a separate compartment, keeping the culture media in each compartment separated. Classic experiments using cultures of peripheral neurons in these chambers demonstrated the necessity for trophic peptides to signal at the axons and growth cones themselves for the axons to survive and grow (Fig. 3; Campenot 1994). Trophic peptides in the cell body compartment keep the neurons alive, but the axons in the peripheral compartment die back. Amazingly, in these experiments the presence of trophic peptides only in the peripheral (axon) compartment is sufficient to induce survival of the cell body. Therefore, provision of proper growth signals to the axons is as important as providing survival signals to the cell body and point to the importance of providing developing neurons with axon growth signals all along the growth pathway. For example, RGC axon growth is stimulated by soluble signals from the retina, optic nerve, and superior colliculus (Goldberg et al. 2002a), and the en passant survival signals provided to axons in the developing spinal cord are likely to similarly provide en passant axon growth stimulation (Wang and Tessier-Lavigne 1999).
Although trophic factors may act solely at the axon, to induce axon elongation they must also activate processes at the cell body (see discussion below). How do growth signals at the axon get passed along to the distant cell body, where gene transcription and translation are induced to support survival and axon growth? As in EGF-mediated signaling (Vieira et al. 1996), neurotrophin-mediated activation of trk receptors in DRG neuons and PC12 cells leads to endocytosis of activated, ligand-bound receptors into clathrin-coated vesicles. These signaling endosomes carry with them the machinery of the ras–raf–MAP kinase signaling cascades, and can continue to activate these pathways once inside the cell (Howe et al. 2001). Neurotrophin signaling endosomes may then be retrogradely transported back to the cell body along microtubules, where they can activate transcriptional regulators and induce new gene expression (Riccio et al. 1997; Watson et al. 1999). In addition, there may be retrograde signaling of neurotrophin-mediated survival signals without retrograde transport of NGF-containing endosomes (MacInnis and Campenot 2002), raising an interesting hypothesis that survival signals and axon growth or other signals may be carried along separate but complementary pathways. It is not yet known if the retrograde transport of signals from the growth cone is necessary for axon growth if similar signals are already acting at the cell body, as is likely to happen in vivo. Retrograde carriage of neurotrophic signals may modify the signal to carry more information, for example by changing signaling components in different cellular compartments, and may provide crucial signals along the way, for example for maintenance of axonal structure along its length, or for suppression or support of axon branching.
We know surprisingly little about the intracellular mechanisms by which neurotrophic signals elicit axon growth. Two relevant questions can be addressed in this domain: what are the intermediate signaling pathways that receptors activate to elicit growth, and what are the specific aspects of axon growth that this signaling pathways regulate? A few models have been particularly fruitful in defining which signaling cascades are important for axon growth. Campenot chamber experiments similar to those above showed that for peripheral neurons, both ras–raf–MAP kinase and PI3-kinase–Akt signaling pathways downstream of neurotrophin receptors contribute to axon outgrowth (Atwal et al. 2000). In recent years, significant progress has been made in identifying how these two signaling pathways are activated by neurotrophin receptors; details of these experiments have been reviewed extensively elsewhere (Kaplan and Miller 2000). A second type of experiment takes advantage of neurons in which apoptosis is blocked by knocking out Bax or overexpressing Bcl-2, as discussed above. In Bcl-2-overexpressing RGCs, pharmacologic inhibition of either MAPK or PI3K partially reduce axon outgrowth, but inhibiting both together is necessary to block axon elongation altogether (Goldberg et al. 2002a). In Bax-deficient DRG neurons exposed to NGF, blocking raf, PI3K, or the PI3K-activated kinase Akt decreases axon elongation, but stimulating the raf–MAPK cascade induces axon elongation, whereas stimulating PI3K or Akt increased axon thickness and branching (Markus et al. 2002). Therefore the data from various investigators continue to be somewhat contradictory and may reflect differing signaling requirements in different neurons isolated at different ages. These data, however, hint at a fascinating complexity of the regulation of these different parameters of axon growth that remains to be more fully studied.
How does the activation of these signaling pathways actually regulate axon growth? At the axon itself, neurotrophic signals may modulate growth cone dynamics, as well as supply and regulate the insertion of membrane and cytoplasmic building blocks. Relevant to the growth cone, for example, are tyrosine kinases such as src, which are activated by both extracellular matrix receptors and by neurotrophin receptors; blocking src activation inhibits the receptor–cytoskeletal linkage critical to engaging the clutch (Suter and Forscher 2001). The p75 neurotrophin receptor appears to constitutively activate rhoA, and neurotrophin binding blocks rhoA activation, leading to axon elongation (Yamashita et al. 1999). The distribution of critical components, for example in cortical neurons the redistribution of β-actin mRNA to axons is responsive to neurotrophin stimulation in a cAMP/PKA-dependent manner (Zhang et al. 1999). Do growth signals control the rate of addition of new membrane? In goldfish retinal neurons, which unlike mammalian RGCs do regenerate after injury, axonal transport increases after injury presumably to supply the regenerating axon (McQuarrie and Grafstein 1982). Similarly, axonal transport is greater in a growing axon branch close to a target cell than in a suppressed branch distant from its target (Goldberg and Schacher 1987). Neurotrophic signaling of microtubule activity may link the insertion of new membrane to growing processes, as vesicles appear to be preferentially inserted in areas of microtubule instability, such as that found in growth cones (Zakharenko and Popov 1998). Therefore trophic signals may induce elongation, at least in part, by regulating the rate of membrane supply and insertion.
Trophic signals may also directly activate translation of axonal mRNAs. In dendrites, specific mRNAs are likely have a physiologic role in modulating dendritic function, including the changes in synaptic efficacy seen in response to neurotrophins (Kang and Schuman 1996) and activity (Weiler and Greenough 1993; Ouyang et al. 1999; Huber et al. 2000), suggesting that extracellular signals directly modulate local protein synthesis or perhaps stimulate mRNA transport into the dendrite (Knowles and Kosik 1997). Evidence for neurotrophin-induced mRNA transport in axons has also been described. As discussed above, β-actin mRNA is localized to axons and axonal growth cones. This localization can be induced by NT-3 signaling, or by cAMP elevation and subsequent PKA activation (Zhang et al. 1999). This axonal distribution can be inhibited with antisense oligonucleotides that disrupt the binding of the actin mRNA to Zipcode Binding Protein (ZBP-1), which also blocked the NT-3-induced protein localization at the growth cone and decreased growth cone motility (Zhang et al. 2001). Therefore trophic stimulation of axon growth may involve the stimulation of localized mRNA transport and protein synthesis as a mechanism of quickly localizing needed proteins.
What do trophic signals do at the cell body to support axon growth? Almost certainly they activate the transcription and translation of genes needed for general cellular growth. For example, neurotrophic signals up-regulate synthesis of lipids and their synthetic enzymes supporting axon outgrowth (Araki and Wurtman 1997). Transcription factors are now being identified that are both regulated by neurotrophins and required for axon outgrowth, for example, the immediate early gene MafK (Torocsik et al. 2002). Even more interestingly, axon growth requires the transcription of genes specific for axon elongation. This was demonstrated beautifully in experiments showing that after injuring the peripheral axon of DRG neurons in vivo, they switch from a branching mode of axon growth to an elongation mode, and this switch requires new gene transcription (Smith and Skene 1997). Other genes have been found to be up-regulated during regeneration (Bonilla et al. 2002), and it is not known whether these and other candidate genes coming from global gene expression studies in progress will have a role in the various processes discussed above, or will open up entirely new areas in the study of axon growth.
Are cellular growth and axon growth always linked? As discussed above, cellular growth is not likely to be immediately limiting for axon growth, but are they coordinately regulated? There are certainly examples of cells growing in excess of axon growth needs. Goldfish RGCs hypertrophy after axotomy before regenerating into the optic nerve (Murray and Grafstein 1969; Devadas et al. 2000). Similarly, stabilizing microtubules with nocodazole blocks axon outgrowth but axonal volume continues to increase, suggesting that axoplasm production continues (Rochlin et al. 1996). Why in each of these examples neurons undergo a period of cellular growth that outstrips their need for axon growth is unknown, but it suggests the hypothesis that cellular growth is regulated and perhaps signaled independently of axon growth, and that both cellular growth and axon elongation signals are required for optimal axon growth. The concept that trophic factors are not redundant is supported by recent work on proliferating Schwann cells in vitro, showing that insulin-like growth factor (IGF-1) stimulated cell growth and less so cell division, whereas glial growth factor (GGF) stimulated cell division without cell growth, and together they synergized for maximal proliferative potential (Conlon et al. 2001). In purified RGC cultures, both BDNF and CNTF induce similar rates of axon growth, but the two together induce more than either alone, raising the analogous hypothesis that different trophic factors may be responsible for different facets of axon growth (Goldberg et al. 2002a). What the feedback signals might be that coordinate growth cone procession and supply of critical components, however, is unknown.
An interesting difference between the ability of trophic peptides to promote axon growth by CNS and PNS neurons has been identified. Peptide trophic factors, such as neurotrophins, are sufficient to induce axon growth by purified PNS neurons in culture. In contrast, to elicit axon growth from CNS neurons in culture, peptide trophic signals alone are insufficient. For instance, retinal ganglion cells (RGCs) fail to survive in the presence of such trophic signals as BDNF or CNTF unless their cAMP levels are elevated, either pharmacologically or by depolarization (Meyer-Franke et al. 1995). cAMP elevation and depolarization do not promote axon growth on their own. Similarly, RGCs kept alive with Bcl-2 overexpression extend axons only poorly in response to BDNF, but this axon growth is greatly potentiated by cAMP elevation or by physiological levels of electrical activity, either from endogenous retinal activity or from direct electrical stimulation when cultured on a silicon chip (Goldberg et al. 2002a).
Do neurons have to be electrically active to respond to trophic activities for axon growth? Experiments in vivo suggest that electrical activity is not absolutely required: injecting tetrodotoxin into the eye to block action potentials (Shatz and Stryker 1988) or studying the munc-18 knockout mouse in which synaptic release of neurotransmitters is essentially eliminated (Verhage et al. 2000) both reveal that RGCs and other CNS neurons successfully elongate their axons to their targets. Recent studies, however, also highlight the possible effects of electrical activity in sculpting axonal morphology. Activity regulates growth cone responsiveness to guidance cues, enhancing netrin responsiveness and inhibiting myelin repulsion (Ming et al. 2001). And, activity shapes the specificity of local connectivity of axons, for example in the selection and elimination of cortical innervation targets (Kalil et al. 1986; Katz and Shatz 1996; Catalano and Shatz 1998). Data on the effect of activity on axon growth have been more controversial. Neuronal activity may increase the rate of axon arborization in vitro and in vivo by stabilizing growing branches (Rashid and Cambray-Deakin 1992; Cohen-Cory 1999; Cantallops et al. 2000). On the other hand, growth cones may collapse acutely in response to electrical stimulation, but then desensitize and recommence axon growth (Fields et al. 1990). Therefore, after a brief accommodation at the growth cone, the longer-term effects of electrical stimulation appear to promote axon growth.
How does activity increase trophic responsiveness in CNS neurons? In the experiments described above, cultured RGCs were plated at clonal density and were not able to contact each other (Goldberg et al. 2002a), so the mechanism is not likely to be autocrine or synaptic. This rules out an activity-dependent secretion of BDNF (Balkowiec and Katz 2000) or the transfer of trophic signals across synapses (Kohara et al. 2001). The effect did, however, depend on TTX-dependent sodium channels and on PKA activity, consistent with the hypothesis that depolarization-mediated increase in cAMP levels elevates trophic responsiveness. Activity increases the density of trophic receptors on the surface of both RGCs and hippocampal neurons (Meyer-Franke et al. 1998; Du et al. 2000), and increasing the levels of surface trkB on RGCs abolishes the need to elevate cAMP for BDNF to promote axon elongation (Goldberg et al. 2002a). These findings suggest that electrical activity potentiates the CNS axon growth response to BDNF by increasing the surface levels of receptors, rather than by amplifying intracellular signaling induced by activation of surface receptors. They also raise the question of whether activity regulates the surface levels of other types of trophic receptors on CNS neurons. Other receptor systems important for axon growth may also be modulated in neurons. For example, in retinal, hippocampal, and cortical neurons but not in peripheral DRG neurons, activation of the GTPase r-ras increases neurite outgrowth on laminin substrates in culture by activation of integrins (Ivins et al. 2000), and increasing the expression of certain integrins increases the ability of adult DRG neurons to extend neurites on various substrates (Condic 2001). A rapid activation of integrin function can be elicited by a nontranscriptional mechanism that may include surface recruitment, for example DRG neurons increase the levels of surface integrins when exposed to low levels of laminin ligand in vitro (Condic and Letourneau 1997). It is not yet known if there are physiological, in vivo correlates for these activities. If so, such control mechanisms may provide important insight into the developmental loss of the ability of CNS neurons to regenerate.
This trophic dependence contrasts with PNS neurons, which survive and regenerate their axons in response to trophic peptides in the absence of cAMP elevation or electrical activity, raising the hypothesis that the trophic signaling of axon growth may differ between CNS and PNS neurons. Could this difference contribute to their different abilities to regenerate in vivo? Previous studies have suggested that trophic factor delivery alone or electrical stimulation alone do not induce CNS axonal regeneration. If axon growth normally depends on activity in vivo, and if damaged cells are less active, or elevate cAMP less effectively in response to activity, a CNS neuron’s ability to regenerate its axon could be impaired. Therefore it may be crucial to provide trophic peptides as well as signals such as cAMP elevation to ensure an optimal axon growth response (Shen et al. 1999; Goldberg and Barres 2000). Although cAMP elevation has been implicated in overcoming inhibitory signals at the growth cone (Ming et al. 2001), it is interesting to speculate whether some of the effect of cAMP in promoting regeneration in vivo is actually attributable to improving the neurons’ response to trophic or other positive peptide signals (Neumann et al. 2002; Qiu et al. 2002).
Is the rate and extent of axon growth dependent purely on extracellular signals and substrates, or does it also depend on the intrinsic state of the neuron? This is a critical, though largely unanswered, question in research on axon growth and regeneration. Embryonic CNS neurons can regenerate their axons quite readily, but they lose their capacity to regenerate with age (Schwab and Bartholdi 1996; Fawcett 1997). For example, in the spinal cord, axons lose the ability to regenerate between P4 and P20 (Kalil and Reh 1982; Reh and Kalil 1982; Saunders et al. 1992). This developmental loss of regenerative ability has generally been attributed to the maturation of CNS glial cells, both astrocytes and oligodendrocytes, and to the production of CNS myelin, all of which strongly inhibit regenerating axons after injury (Schwab and Bartholdi 1996). Embryonic neurons also develop responsiveness to myelin-associated inhibitors through this period (Bandtlow and Loschinger 1997). In experiments in which a PNS nerve graft (David and Aguayo 1981; Bray et al. 1987) or anti-myelin neutralizing antibodies (Huang et al. 1999) or removal of proteoglycans associated with reactive astrocytes (Moon et al. 2001) allow axons to circumvent contact with these inhibitory CNS glia, however, only a few percent of axons regenerate, and functional recovery typically proceeds remarkably slowly. For example, RGCs take 2 mo to regenerate through a peripheral nerve graft (Aguayo et al. 1987; Bray et al. 1987). These experiments indicate that an inhibitory environment is likely only part of the explanation.
Are the neurons themselves partly responsible? Axons from P2 or older hamster retinas have lost the ability to reinnervate even embryonic tectal explants (Chen et al. 1995). Purkinje cells in cerebellar slices show a similar age-related inability to re-extend axons out of cultured slices (Dusart et al. 1997). This suggests that changes in a CNS neuron’s intrinsic ability to grow could also explain this developmental loss of regenerative ability. The lack of postnatal neurons to re-extend their axons might also be explained by the development of glial cells, however, which are largely generated postnatally. Therefore the ability to separate neurons from CNS glia remains critical to determining whether CNS neurons actually change in their intrinsic axon growth ability during development.
By purifying neurons away from nearby glia at various developmental stages, we recently showed that neonatal RGCs undergo a profound, irreversible loss in their intrinsic ability to regenerate their axons (Goldberg et al. 2002b). When cultured in strongly trophic environments in the complete absence of CNS glia and at clonal density, embryonic RGCs extend axons up to 10 times faster than postnatal RGCs. The evidence for this decreased growth ability being intrinsically maintained is twofold. First, we found that embryonic RGCs grew at a faster rate than postnatal RGCs in a variety of environments that should facilitate growth, including in media containing neurotrophic factors, in media conditioned by cells from the embryonic visual pathway, and after transplantation into developing pathways in vivo. In all cases, embryonic RGCs extended their axons at rates substantially higher than did the postnatal RGCs, suggesting that any extrinsic growth-promoting environment is dependent on an intrinsically set maximal growth rate. Second, we found that RGCs purified from either embryonic or postnatal ages, and cultured away from all of the other cell types with which they normally interact, retained their faster or slower growth phenotypes, respectively. Therefore the difference in the abilities of embryonic and postnatal RGCs to elongate axons is not dependent on continued signaling by neighboring cell types, but is intrinsically maintained.
Do these neurons lose their axon growth ability as the result of intrinsic aging? Embryonic RGCs aged up to 10 d in purified cultures, to the age they would decrease their axon growth ability in vivo, continue to elongate their axons rapidly, suggesting that the change in axon growth ability is signaled by an extrinsic cue (Goldberg et al. 2002b). The decrease in axon growth ability occurs sharply at birth during the period of target innervation, but to our surprise E20 RGCs cocultured with superior collicular slices retain their rapid axon growth ability, suggesting that target contact is responsible for this change. We similarly tested optic nerve and retina, and found that only retinal maturation is sufficient to induce the developmental decrease. We went on to test both soluble and contact-mediated cues from the three major cell types that contact RGCs in the retina—amacrine cells, bipolar cells, and retinal glia—and found that only amacrine cell membranes, but not amacrine cell conditioned media, induced E20 RGCs to take on the slower postnatal phenotype. Therefore a membrane-associated cue from these pre-synaptic amacrine cells signals embryonic RGCs to decrease their axon growth ability, but once this signal is sent, the loss is permanent—removal of the amacrine cells does not allow the RGCs to speed up again.
Why would a presynaptic cell type signal these CNS neurons to decrease their intrinsic axon growth ability? Remarkably, at about the same time that neonatal RGCs lose their ability to rapidly elongate axons, they gain the ability to rapidly generate dendrites (Goldberg et al. 2002b). This increase in dendritic growth ability is not the result of intrinsic aging, but is similarly signaled by a retinal cue. Therefore retinal cues trigger neonatal RGCs to irreversibly switch from an axonal to a dendritic growth mode. We hypothesize that neurons within the inner nuclear layer, which normally relay visual signals from the photoreceptors to RGCs, form synapses onto RGC dendrites at this time, and may signal RGCs to put more energy into expanding their local dendritic connections. Whether the increase in dendritic growth ability and decrease in axon growth ability are the result of the same signal is not addressed by these data (Goldberg et al. 2002b). Are other types of CNS neurons signaled during development to undergo a similar switch? To directly address this question, methods to purify and culture other populations of CNS neurons will need to be developed.
An interesting implication of these data is that the control of axon versus dendrite growth may be largely intrinsic, rather than determined by separate extracellular cues. Axons and dendrites appear to respond to many, or possibly all, of the same growth and guidance signals (for example, see McAllister et al. 1995; Polleux et al. 2000; Xu et al. 2000). It is unknown whether some of the signals found previously to increase dendrite outgrowth, such as bone morphogenic protein-7 (for review, see Higgins et al. 1997), actually modulate the growth mode of the neuron from axonal to dendritic, rather than stimulating dendritic growth cones preferentially. Many of the previous studies that have shown that presynaptic cell types stimulate dendritic growth (for example, see Nedivi et al. 1998) may reflect a switch in the neurons from axonal to dendritic growth modes, after which the neurons extend dendrites in response to growth signals already present. Our findings therefore suggest that the ability of neurotrophic factors to stimulate axon and dendrite growth may strongly depend on whether a neuron is an axonal or dendritic growth state, and raise the question of the identity of the extracellular signal that induces a dendritic growth mode (Goldberg et al. 2002b).
In response to this amacrine cell-associated cue, RGCs could gradually increase expression of genes that limit axon growth or decrease expression of genes necessary for faster axonal elongation, or both. Almost any of the pathways discussed above—the motor and clutch in the growth cone or the supply of parts fueling process extension—could therefore be regulated at this intrinsic level. For instance, in the developing chick, RGCs lose axon growth responsiveness to laminin either by down-regulating the laminin receptor integrin α6β1 (Cohen et al. 1989; de Curtis et al. 1991; de Curtis and Reichardt 1993), or by down-regulating the activation of such integrins (Ivins et al. 2000), although they continue to respond to laminin-2 (merosin; Cohen and Johnson 1991). At least for mammalian RGCs, such changes are not responsible for the observed decrease in growth ability, as postnatal RGCs continue to be responsive to laminin-1, as well as a variety of other substrates, and laminin-2 is no more effective than laminin-1 in promoting postnatal RGC axon growth (Goldberg et al. 2002b). Similarly, a difference in trophic receptor levels or responsiveness to trophic signals could explain these differences. For example, depolarization rapidly elevates TrkB receptors on the surface of CNS, but not PNS neurons (Meyer-Franke et al. 1998; Du et al. 2000). Exogenously elevating TrkB levels, however, fails to increase P8 axon growth rates to embryonic levels (Goldberg et al. 2002b). Furthermore, a simple down-regulation of a single receptor cannot account for the change because postnatal RGCs fail to rapidly extend axons in response to all tested axon growth-promoting stimuli and substrates. The anti-apoptotic protein Bcl-2 was proposed as an intrinsic genetic switch that decreases axon growth rate by RGCs (Chen et al. 1997), but Bcl-2 overexpression by purified RGCs in culture neither promotes axon growth nor enhances axon growth in response to neurotrophic signaling in vitro or in vivo (Goldberg et al. 2002b), a result consistent with other findings (Greenlund et al. 1995;Michaelidis et al. 1996; Chierzi et al. 1999; Goldberg and Barres 2000;Lodovichi et al. 2001).
A related question is, what molecular mechanisms could dictate a neuron’s axonal or dendritic growth mode? As mentioned above, many of the dendrite “growth stimulators” may actually act via enhancing the neuron’s dendritic growth or differentiation mode. Further candidates may come from a better understanding of how axons and dendrites become differentiated. The most useful model for axon and dendrite differentiation has come from studies of cultured embryonic hippocampal neurons by Banker and colleagues over the last two decades. In vitro, these neurons initially extend multiple equivalent neurites; over the course of 5–7 d one becomes the faster growing axon and the rest differentiate into shorter, thicker dendrites (Dotti et al. 1988). Although such a delayed differentiation of axons and dendrites has not been observed in vivo, this model has been enormously fruitful for discerning how axons and dendrites are constructed. For example, microtubules in axons and dendrites point in opposite directions—in axons, the microtubules all have their plus ends pointed away from the cell body; in dendrites, microtubules are oriented in both directions. Initially, however, the undifferentiated neurites all have plus-end-distal axon-like microtubules; minus-end-distal microtubules are steadily added to dendrites on neurite differentiation (Baas et al. 1988, 1989). A microtubule motor protein, CHO1/MKLP1, is responsible for this later minus-end-distal transport, and subsequent differentiation such as the dendritic predominance of golgi and ribosomes discussed above is also lost if CHO1/MKLP1 is depleted (Yu et al. 2000). Therefore, CH01/MLKP1 is one interesting candidate for helping to induce the axon to dendritic switch.
Axons that get cut either by injury or disease in the peripheral nervous system (PNS) reinitiate the whole process of axon growth, elongating back to their peripheral targets and restoring sensory and motor function. Yet when axons in the adult mammalian central nervous system (CNS) are severed, they fail to regenerate. The failure of CNS neurons to regenerate their axons is generally ascribed to an inhibitory glial environment; however, emerging data suggest that the extrinsic and intrinsic control of axon growth may also have a significant role. Our understanding of the mechanisms of axon growth has generated much progress in understanding the failure of axons to regenerate in the CNS. For example, understanding that the regulation of both repulsion and collapse of growth cones by inhibitory molecules rely on the same intracellular signaling pathways suggests that manipulating these common regulators can increase regeneration. For example, blocking the growth cone collapsing activity of rho increases RGC regeneration in the inhibitory environment of the optic nerve in vivo (Lehmann et al. 1999), an effect that may be caused in part to the blockade of inhibitory signaling at the growth cone, but also in part by increasing the intrinsic growth ability of the neurons themselves.
Similarly, evidence is accumulating to support a role for neurotrophins in stimulating axon growth and simultaneously signaling the growth cone to ignore inhibitory cues (Cai et al. 1999). On one hand, knowing that signals must be provided to the axons themselves to support axonal survival and growth suggests that glial cells in the CNS may not provide sufficient growth signals to encourage axons to regenerate after injury. Not surprisingly then, the addition of peptide trophic factors enhances regeneration of both CNS and PNS axons in the spinal cord (Schnell et al. 1994; Oudega and Hagg 1996). Are neurotrophins stimulating axon growth, or are they more specifically overcoming myelin inhibition (Cai et al. 1999)? Recent data identified arginase I as a BDNF-regulated enzyme in neurons sufficient to overcome inhibition by myelin (Cai et al. 2002), possibly by facilitating the synthesis of other genes or by enhancing cytoskeletal dynamics such as microtubule polymerization. The identification of this and other genes regulated by neurotrophic factors should allow the further dissection of the mechanisms of stimulating axon growth generally from overcoming glial inhibition specifically.
Does the loss of intrinsic axon growth ability by RGCs (Goldberg et al. 2002b) contribute to their failure to regenerate after injury in the adult? A loss of intrinsic axon growth ability could explain why in many previous experiments regeneration proceeds remarkably slowly, even when glial inhibitory cues have been removed. For example, most RGCs take 2–3 mo to regenerate through peripheral nerve grafts to the superior colliculus (Aguayo et al. 1987; Bray et al. 1987), although the fastest RGCs may extend 1–2 mm/d into peripheral nerve grafts after a 5-d delay (Cho and So 1987). This is approximately the rate they extend axons in vitro (Goldberg et al. 2002b), and far slower than the 10 d they would take if they elongated their axons at 10 mm/d. Furthermore, adult cortical or retinal neurons or RGCs transplanted into adult white matter elaborate only short, dendritic-like processes (Goldberg et al. 2002b) and as discussed by Condic (2002), suggest that many CNS neurons may undergo a similar switch from an axonal to a dendritic growth mode, and that this switch may underlie the failure of these neurons to regenerate their axons.
Is this switch reversible? Soluble signals from optic nerve glia or peripheral nerve glia, or from retinal or superior collicular cells were not able to reverse the loss of rapid axon growth ability in RGCs in vitro, suggesting that the developmental switch may normally be permanent (Goldberg et al. 2002b). There remains the possibility, however, that other signals, or the discovery and manipulation of genes involved in this transition, may revert the postnatal neurons to their embryonic axon growth ability, and that this may be critical to increase regeneration in the CNS (Cai et al. 2001, 2002).
In contrast to RGCs, PNS neurons do not dramatically alter their axon growth ability during development. Both during development and in adult regeneration models, sensory axons rapidly grow toward their targets at ∼0.5–1 mm/d. Different types of PNS neurons have been found to extend axons at different intrinsic rates that vary by several fold (Davies 1989), they maintain this high rate of axonal growth across a broad range of neuronal ages, before and after target innervation (Argiro and Johnson 1982; Davies 1989). Although PNS neurons do not lose their ability to rapidly regenerate their axons during development to nearly the same degree, adult sensory neurons explanted in vitro initially grow in an arborizing, highly branching mode. After a day in culture, they revert into a rapidly elongating, minimally branching mode, and a transcription-dependent switch discussed above controls the competence of these neurons to elongate their axons. This transition can be elicited in vivo by injuring the PNS axon a few days before explanting the neuron, a paradigm called a “conditioning lesion,” but this change to an elongation mode either in vivo or in vitro typically involves an increase in growth rate of about twofold (Smith and Skene 1997). Therefore, both CNS and PNS neurons show an intrinsic state dependence in their axon growth ability, but whereas PNS neurons remain fairly true to their developmental axon growth ability and quickly revert to this fast elongation when called on to regenerate their axons, RGCs and possibly other CNS neurons dramatically lose their developmental axon growth ability and fail to revert to a rapidly regenerating mode after injury.
What are the transcription-dependent changes that underlie PNS neurons ability to rapidly regenerate? There are many changes in gene expression that occur in peripheral neurons after axotomy, including up-regulation of transcription factors, cytoskeletal proteins, molecular motors that carry material up and down axons, cell adhesion and axon guidance molecules, and trophic factors and receptors (for review, see Tetzlaff and Steeves 2000). But which genes are sufficient, and which are necessary? Using a candidate gene approach, Skene and colleagues recently showed that overexpressing two growth cone proteins, GAP-43 and CAP-23, is sufficient to dramatically increase DRG axon growth in vitro and in the injured spinal cord in vivo (Bomze et al. 2001). Experiments are underway to characterize the differences in axon growth between developing and regenerating sensory neurons. For example, GAP-43 promoter elements are active in developing but not in regenerating zebrafish neurons (Udvadia et al. 2001). Similarly, whereas embryonic DRG neurons depend on the MEK and less-so PI3K signaling pathways for axon growth, regenerating DRG neurons depend on JAK/STAT signaling for axon growth (Liu and Snider 2001). Early data using microarrays to more broadly examine changes in global gene expression between embryonic and adult sensory neurons similarly suggest that adult neurons do not simply revert to embryonic gene expression. Rather, conditioning lesions turn on a distinct, but partially overlapping, set of genes for peripheral regeneration (Bulsara et al. 2002; Griffin et al. 2002). As these studies shed more light on how axons normally grow during development and after injury, they may also reveal clues to the failure of CNS regeneration and the seemingly permanent loss of intrinsic axon growth potential of CNS neurons like RGCs.
Despite its great importance, our understanding of how axons grow is still in its infancy. Although a great deal of recent progress has been made in understanding the nature of the extracellular signals that induce axon growth, we still know relatively little about the intracellular molecular mechanisms by which these signals are transduced into the neuron and ultimately how they elicit growth. Fortunately, new molecular tools including genomics, proteomics, and RNAi should help us to elucidate novel components of the axon growth machinery that couple transmembrane signaling receptors at the growth cone to the axonal cytoskeleton. In particular, these methods should soon reveal the underlying transcriptional program elicited by peptide trophic factors that triggers axon growth. Determining what are the full roster of genes induced during axon growth, which genes are needed for axon elongation both during development and for regeneration, and whether differences between CNS and PNS neurons in the transcriptional response to injury underlies the failure of CNS neurons to regenerate, remain critical areas of inquiry. Such genetic expression surveys may yield vital clues to how the disparate facets of axon growth are regulated coordinately by extracellular signals and intrinsic neuronal growth states. Finally, broadening our understanding of how axons grow during normal development will help us understand why they fail to regrow after CNS injury.
Of course, essential oils have long been known for their ability to heal, but few people realize that they can even kill off bacteria, viruses, and fungi, fighting off and preventing a host of infections, treating skin conditions and more. They can be a great way to fight bacteria without having to experience potentially severe side effects that come with antibiotics. In fact, they’re generally much safer than taking a prescription antibiotic and you’ll be helping to address the worldwide problem of antibiotic resistance as well.
According to a report by the World Health Organization AKA WHO, years of excessive and often careless antibiotic abuse, as well as the use of antibiotics in animals like cows that are raised for meat and milk, have led to one of the world’s most serious health problems. That means, whenever we can turn to a natural solution it makes sense to do so – otherwise those important medications will be ineffective when we need them most.
These essential oils are all an excellent way to do just that.
This oil is only one of a few antibacterial, antiviral, and antimicrobial essential oils that can be applied directly to the skin without diluting it first. It’s well-known for its ability to treat skin conditions like eczema, psoriasis, acne and warts.
Also known as melaleuca oil, it comes from the leaves of the tea tree, or melaleuca plant, which is native to Australia, and was used for centuries by aboriginal communities in the country as an antiseptic by crushing the leaves of the tea tree, and applying them to cuts, infections, and burns. In the 1920s, it became widely-known beyond Australia’s borders when chemist Arthur Penfold published a series of papers on its antiseptic properties.
Since then, there have been countless studies conducted that have shown the potential of this oil for healing. For example, in 2004, a scientific review examined its ability to kill bacteria and found that it may be used as an adjunctive treatment for wounds, and may also be able to treat severe infections like methicillin-resistant Staphylococcus aureus. A 2013 study replicated tea tree oil’s effects on humans who had wounds infected with the superbug staphylococcus aureus – the participants treated with tea tree oil experienced significantly faster healing time compared to those who were treated conventionally.
You can use it in a diffuser or a nebulizer to help alleviate head and chest congestion, a stuffed up nose and other cold or flu symptoms. Steam inhalation helps to clear congested nasal passages as well as fight off bacteria. You can simply add a few drops of tea tree oil to a pot of steaming hot water, cover your head with a towel and then breathe in the vapors for five minutes or so.
Tea tree oil can also be utilized for its antifungal properties by applying it directly to problems like toenail fungus and athlete’s foot.
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Oregano is a commonly used spice adding flavor to lots of dishes, but it also offers excellent therapeutic antibiotic effects. It was first recognized for its antibacterial and disinfecting properties in ancient Greece, where it was frequently used to treat wounds and bacterial infections on the skin. It contains bacteria-killing abilities and can even help control staph infections. It also provides antiseptic, antiviral, antioxidant, antifungal, anti-inflammatory and pain-relieving properties as well.
In fact, a 2001 study conducted out of Georgetown University and published in Science Dailyfound that the oil’s germ-killing properties were nearly as effective as most antibiotics. It’s especially noted for battling conditions like foot and nail fungus. To do so, just place a few drops of the oil in a small tub of water and soak your feet in the solution. Or, you can use it directly on the affected area by diluting one drop of oregano essential oil in a carrier oil.
The oil can also be quite helpful if you’re suffering from a sinus infection. Relief may be found by placing a few drops of oregano essential oil into steaming water (such as the tea tree oil solution above), and then inhaling the steam. The oil not only causes significant damage to bacteria, but it also helps minimize the bacteria’s ability to produce toxins that can be extremely hazardous.
Learn more about oregano essential oil here, and get yourself a bottle of Plant Therapy Oregano Oil here.
Cinnamon oil may be one of the strongest antibacterial essential oils of all, according to research. In a 2006 study conducted out of Loyola College’s Entomology Research Institute in Chennai, India, it was tested against a number of bacteria, including Staphylococcus aureus, Escherichia coli, Bacillus subtilis, pseudomonas aeruginosa, and Klebsiella pneumoniae. Cinnamon essential oil came out on top as the most powerful over other antibacterial oils like clove, Rosemary, Geranium, lime, orange, and lemon.
Research published in the Journal of Contemporary Dental Practice was conducted on the effectiveness of cinnamon oil against “planktonic E. faecalis” in a root canal procedure and the results were striking. They revealed that the oil was able to eliminate bacterial growth after seven and 14 days of procedure, concluding that it’s an effective antibacterial agent against planktonic and biofilm E. faecalis and can be an outstanding agent for use in root canal treatments.
Make a homemade toothpaste with cinnamon essential oil to fight bacteria in the mouth, or use a ready-made cinnamon toothpaste – such as this one. Use cinnamon oil in a diffuser to purify the air and kill off airborne bacteria. It’s especially effective when used with other antibacterial agents like tea tree, eucalyptus or clove oil, killing nearly 99% of airborne bacteria in just minutes.
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Grapefruit essential oil has also been reported to be a highly effective natural antibiotic with the ability to fight a host of common infections. In a study from the University of Texas, drops of the extract were tested for antibacterial properties and the researchers found that it was comparable to “proven topical antibacterials.”
A 2011 study published in the International Journal of Food Science & Technology reported that the oil was effective against strains of bacteria like Staphylococcus aureus, Enterococcus faecalis, Staphylococcus epidermidis, Escherichia coli, Salmonella thyphimurium, Serratia marcescens, and Proteus vulgaris.
In addition to its ability to fight off bacteria, grapefruit essential oil contains antimicrobial properties that may help treat and prevent an infection in wounds and cuts as well as eliminate microbes in the kidneys and gut. It supports endocrine function, encourages the production of bile and gastric juices to aid the digestive system, and it offers stimulating effects that can make you feel more alert.
Use grapefruit essential oil by inhaling it to help eliminate mental fatigue, headaches or depression, as well as to activate the lymphatic system to clear toxins.
Learn more about grapefruit essential oil here, and pick up a bottle of Plant Therapy Grapefruit Oil from this page.
One of the most well-known uses of clove essential oil is for treating a toothache. In fact, people have been using it to treat this painful problem for hundreds of years. Its use as a toothache cure was first documented in 1640, though it’s likely to have been applied for more than 2,000 years as part of homeopathic treatments.
Because it contains a high level of eugenol, this oil has been proven to be especially versatile and has been thoroughly researched as an effective alternative to many modern medical treatments.
In a test of 21 essential oils that went up against bacteria like E. coli, it came out second only to cinnamon, as the very best inhibitors.
To use it for tooth pain, add one drop of the oil onto a cotton ball and press it onto the affected area for up to 15 minutes. You can also use it topically to treat skin conditions like acne and warts or inhale it to help ease respiratory problems like a cold, cough or asthma.
Discover more about clove oil here and get yourself a bottle from here.
Thyme oil is antibacterial, antispasmodic, antiseptic, and contains calming properties. Research conducted out of the University of Tennessee’s Department of Food Science and Technology evaluated its effect against bacteria in milk and salmonella. Results, published in the International Journal of Food Microbiology, indicated that its “nanoemulsions” may be an excellent option for protecting the body from harmful bacteria by using it as an antimicrobial preservative for food.
Thyme oil has the ability to drain congestion and cure an infection, helping one to fight off a cold and upper respiratory conditions. It can also help to rid the body of toxins, making it an ideal remedy when you feel a cold, flu or other illness coming on. Thyme is also used to treat conditions like fatigue, gout, arthritis, wounds, menstrual, pre-menopausal and menopausal symptoms. Researchers from Babol University of Medical Sciences in Iran confirmed that thyme actually reduces the pain of menstrual cramps better than ibuprofen.
To battle an illness, place a few drops into your diffuser, or add thyme oil to steaming hot water and inhale.
Ready to try thyme oil? Pick up a bottle from Plant Therapy here.
Lemongrass has been found in studies to be another one of the most potent antibacterial essential oils out there. While not as strong smelling as lemon essential oil, which is commonly used in antibacterial cleansers, it’s no less powerful. It has the ability to inhibit bacteria growth both externally and internally, as well as battle bacterial infections, skin conditions, body odor and even food poisoning, thanks to its citral and limonene content.
Lemongrass essential oil can be used in a carrier oil as a natural cleanser, taking advantage of its antiseptic and astringent properties for more evenly toned skin, and rubbed into the scalp to relieve the pain of a headache, or on the body to alleviate muscle pain. It helps improve blood circulation, relieving cramps, backaches and muscle spasms. If you’re prone to athlete’s foot, rub it onto your feet to help stifle the growth of fungi.
Learn more about lemongrass essential oil here and get yourself a bottle from Plant Therapy here.
Bergamot has a delightful citrus scent along with powerful antibacterial properties. Italians have long recognized its medicinal potential, using it to get rid of intestinal worms. It’s been used to heal scars, relieve the pain of a headache, reduce muscle tension and kill bacteria. It’s well known to fight off certain types of bacteria, and battle infections like endocarditis, meningitis, and urinary tract infections.
Bergamot essential oil can also help those suffering from conditions like cold sores, herpes and mouth ulcers, as it helps to speed healing. It can even heal and prevent acne breakouts too.
If you’ve got a urinary tract infection, take advantage of its benefits by rubbing the oil diluted in a carrier oil onto your abdomen and throat, and add a few drops to your diffuser as well.
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