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Making computers reason and learn by

Structure-mapping engine enables computers to reason and learn like humans, including solving moral dilemmas

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Northwestern University’s Ken Forbus is closing the gap between humans and machines.

Using cognitive science theories, Forbus and his collaborators have developed a model that could give computers the ability to reason more like humans and even make moral decisions. Called the structure-mapping engine (SME), the new model is capable of analogical problem solving, including capturing the way humans spontaneously use analogies between situations to solve moral dilemmas.

“In terms of thinking like humans, analogies are where it’s at,” said Forbus, Walter P. Murphy Professor of Electrical Engineering and Computer Science in Northwestern’s McCormick School of Engineering. “Humans use relational statements fluidly to describe things, solve problems, indicate causality, and weigh moral dilemmas.”

 

The theory underlying the model is psychologist Dedre Gentner’s structure-mapping theory of analogy and similarity, which has been used to explain and predict many psychology phenomena. Structure-mapping argues that analogy and similarity involve comparisons between relational representations, which connect entities and ideas, for example, that a clock is above a door or that pressure differences cause water to flow.

Analogies can be complex (electricity flows like water) or simple (his new cell phone is very similar to his old phone). Previous models of analogy, including prior versions of SME, have not been able to scale to the size of representations that people tend to use. Forbus’s new version of SME can handle the size and complexity of relational representations that are needed for visual reasoning, cracking textbook problems, and solving moral dilemmas.

“Relational ability is the key to higher-order cognition,” said Gentner, Alice Gabrielle Twight Professor in Northwestern’s Weinberg College of Arts and Sciences. “Although we share this ability with a few other species, humans greatly exceed other species in ability to represent and reason with relations.”

Supported by the Office of Naval Research, Defense Advanced Research Projects Agency, and Air Force Office of Scientific Research, Forbus and Gentner’s research is described in the June 20 issue of the journal Cognitive Science. Andrew Lovett, a postdoctoral fellow in Gentner’s laboratory, and Ronald Ferguson, a PhD graduate from Forbus’s laboratory, also authored the paper.

 

Many artificial intelligence systems — like Google’s AlphaGo — rely on deep learning, a process in which a computer learns examining massive amounts of data. By contrast, people — and SME-based systems — often learn successfully from far fewer examples. In moral decision-making, for example, a handful of stories suffices to enable an SME-based system to learn to make decisions as people do in psychological experiments.

“Given a new situation, the machine will try to retrieve one of its prior stories, looking for analogous sacred values, and decide accordingly,” Forbus said.

SME has also been used to learn to solve physics problems from the Advanced Placement test, with a program being trained and tested by the Educational Testing Service. As further demonstration of the flexibility of SME, it also has been used to model multiple visual problem-solving tasks.

To encourage research on analogy, Forbus’s team is releasing the SME source code and a 5,000-example corpus, which includes comparisons drawn from visual problem solving, textbook problem solving, and moral decision making.

The range of tasks successfully tackled by SME-based systems suggests that analogy might lead to a new technology for artificial intelligence systems as well as a deeper understanding of human cognition. For example, using analogy to build models by refining stories from multiple cultures that encode their moral beliefs could provide new tools for social science. Analogy-based artificial intelligence techniques could be valuable across a range of applications, including security, health care, and education.

“SME is already being used in educational software, providing feedback to students by comparing their work with a teacher’s solution,” Forbus said. But there is a vast untapped potential for building software tutors that use analogy to help students learn.”

 

 

 

 

 Story Source:

The above post is reprinted from materials provided by Northwestern University. Note: Materials may be edited for content and length.

 Journal Reference:

1.Kenneth D. Forbus, Ronald W. Ferguson, Andrew Lovett, Dedre Gentner. Extending SME to Handle Large-Scale Cognitive Modeling. Cognitive Science, 2016; DOI: 10.1111/cogs.12377

Cite This Page:

Northwestern University. “Making computers reason and learn by analogy: Structure-mapping engine enables computers to reason and learn like humans, including solving moral dilemmas.” ScienceDaily. ScienceDaily, 21 June 2016. <www.sciencedaily.com/releases/2016/06/160621155000.htm>.

 

Turning the Internet of things into the Internet of ‘cha-ching’

That Nest thermostat on your wall could be making you money. Not saving money, mind you. That’s its day job: learning your habits so it can fine-tune your energy use and lower your power bills. But most of the time, it’s just sitting there with nothing much to do. Add in some code written by a group of UAB computer researchers, however, and that Nest — along with all the other smart refrigerators, TVs, light bulbs, sensors and more that make up the Internet of Things — could be helping traveling businesspeople crunch data, tourists Photoshop their vacation snaps, and more.

The system, known as Aura, is the brainchild of a UAB team led by Ragib Hasan, Ph.D., assistant professor in the UAB College of Arts and Sciences Department of Computer and Information Sciences, and director of the SECRETLab research group. Aura pools the unused processing power available in Web-linked devices like the Nest, the poster child of the new Internet of Things (IoT) age.

Aura is designed to connect dozens or even hundreds of these devices into a localized cloud service for customers in need of additional computer horsepower. In addition to the extra processing muscle, those customers would keep their data nearby, instead of broadcasting it to mammoth data centers around the world.

My own private cloud

“With Aura, the building becomes an extension of the mobile phone’s processor and memory,” Hasan explains. “It doesn’t matter that the phone has a weak processor and limited memory — we can do most of the computation on the IoT devices in the building. It doesn’t matter that the phone has limited memory, because it now has access to a vast amount of memory belonging to the IoT devices.”

In other words, Hasan says, “Aura allows us to create powerful desktop-level apps to run on mobile phones, something that is not currently possible.”

Imagine an account executive arriving at her client’s offices, only to come across a new piece of data that would be perfect for her presentation. With only an iPhone handy, she doesn’t have the processing power to recalculate her complex spreadsheet. But “with Aura, she could offload this calculation to a secure, local cloud, and get a response quickly,” says Hasan.

 

Why would IoT device owners want to take part? Money, of course. Customers would pay a fee for the service, and device owners would be compensated based on the processing power they contributed to the operation. (See “How Aura Works.”) Hasan first described Aura in a presentation at the IEEE Mobile Cloud conference in San Francisco in March.

Aura is not limited to buildings, Hasan adds. “We can think of Aura as a system for building local ad hoc clouds anywhere.” As you are driving down the Interstate, your phone can tap into the computing capabilities of your own car, plus all the surrounding cars.

 From Amazon to Aura

Aura was inspired in part by the origin story of Amazon Web Services, the runaway leader in the cloud computing business. Back in the mid-2000s, Amazon was confronting a design challenge familiar to physical retail giants like Walmart: You need to have enough capacity to meet peak demand, even if that only occurs a few times per year. That’s why the parking lots at Walmart stores are built so they are big enough to handle the Black Friday and Christmas rushes, even though they will be mostly empty for the rest of the year. For Amazon, it meant the company had to have enough computer servers to handle the flood of traffic at Christmas and other big shopping times. But for most of the rest of the year, those machines were underused.

So, in 2006, Amazon launched Web Services, which rents out the company’s unused server space to all comers, including giants such as Netflix, Time Inc, and Pinterest, along with huge numbers of tech startups. It now earns Amazon billions: $1.57 billion in the first quarter of 2015, for example.

Hasan wanted to do the same with the unused processing power latent in IoT devices such as the Nest, LED lightbulbs that can be controlled by smartphone, in-car Web apps and more. A current report from tech giant Cisco Systems estimates there are already 18.2 billion IoT devices on the market, and the technology research firm Gartner predicts that there will be 26 billion such devices in operation by 2020 — four times the total number of smartphones, laptops, tablets and traditional computers.

 

“In any urban environment,” the UAB researchers, led by Hasan and graduate students Mahmud Hossain and Rasib Khan, write in the paper they presented at IEEE Mobile Cloud, “there will be thousands of such devices, with current estimates of 1,000 to 5,000 trackable devices around a given user.” These devices have strong processors and memory to spare. The Nest, the researchers point out, has a 1 GHz ARM Cortex A8 CPU, enough power to “support a significant value chain above and beyond its current use cases given the extra capabilities inherent in the system.”

The price is right?

For Aura to succeed, it must offer customers the pay-as-you-go flexibility of contemporary cloud services, while offering device owners suitable compensation for use of their machines.

The Aura provider, Hasan explains, would “act as an intermediary and hold the payments in escrow until both parties are satisfied with the completion of a task.” Building managers and other business owners would have another incentive to take part. “Why do so many people prefer to hang out at Starbucks? A major reason is the free WiFi,” Hasan says. “Starbucks provides a service of value to customers. As we make buildings Aura-capable, businesses in these buildings will have an added advantage.”

 MapReduce in miniature

In a proof-of-concept test, the UAB team successfully created a version of Google’s widely used MapReduce framework — the essential program that efficiently breaks down one big job into thousands of smaller ones for computation, then reassembles the results into a single answer — to ContikiOS, an operating system used by many IoT devices.

This early stage work, funded in part by grants to Hasan from Google and the National Science Foundation, was conducted with virtual devices. Hasan is now seeking funding for large-scale testing with hundreds of actual IoT devices in his research space at UAB’s Facebook Suite.

One problem that will get plenty of scrutiny in these tests is data security. “Communicational security is ensured via various security protocols,” Hasan explains. “Additionally, Aura incorporates a container-based segregation of the tasks running on the IoT devices to protect the core functionality of the devices. The distributed task assignment model also allows the system to ensure that any ill-motived device owner cannot obtain any holistic view of the original data and results.”

 The collaborative cloud vs. the big data cloud

Aura offers the same flexibility and scalability as traditional clouds, yet in a highly localized computing environment. It can also be deployed to existing devices with “minimal additional expense,” the researchers say. But Amazon has mega-sized data centers spread out in 11 locations around the world. Your data has to travel a long way. For certain applications, such as “highly interactive, time critical services, especially for mobile clients,” as the researchers say in their paper, a cloud that is physically near you, and can move with you, would bring optimal performance.

Aura isn’t looking to put Amazon out of business. “IoT clouds may be the clouds of interaction, work offload, user experience, and collaboration,” the researchers write, “whereas data center clouds will continue to do the large scale big data analytics, HPC, and multi-tier business applications.” Even better, Aura can follow users from point to point, always ready when they need it.

With access to Aura, developers can create more complex mobile apps, Hasan adds. Ultimately, he says, it could also power a “truly ‘smart’ city where where every building or other physical infrastructure is capable of running computations, with new innovative applications such as secure supply chains, trustworthy location proofs, crowd-sensing, city-wide anomaly detection, and disaster-time localized computing support.”

Story Source:

The above post is reprinted from materials provided by University of Alabama at Birmingham. Note: Materials may be edited for content and length.

Cite This Page:

University of Alabama at Birmingham. “Turning the Internet of things into the Internet of ‘cha-ching’.” ScienceDaily. ScienceDaily, 15 June 2015. <www.sciencedaily.com/releases/2015/06/150615124717.htm>.

Patient-Physician Web Messaging

Background: Patients want electronic access to providers. Providers fear being overwhelmed by unreimbursed messages.

Objective: Measure the effects of patient-physician web messaging on primary care practices.

Design/Setting: Retrospective analysis of 6 case and 9 control internal medicine (IM) and family practice (FP) physicians’ message volume, and a survey of 5,971 patients’ web messaging with 267 providers and staff in 16 community primary care clinics in the Sacramento, CA region.

Measurements and Main Results: Case telephone volume was 18.2% lower ( P= .002) and fell 6.50 times faster than control. Case total telephone plus web message volume was 13.7% lower ( P =.025) and fell 5.84 times faster than control. Surveys were responded to by 40.3% (1,743/4,320) of patients and 61.4% (164/267) of providers and staff. Patients were overwhelmingly satisfied and providers and staff were generally satisfied; both found the system easy to use. Patient satisfaction correlated strongly with provider response time (Γ=0.557), and provider/staff satisfaction with computer skills (Γ=0.626) (Goodman-Kruskal Gamma [Γ] measure of ordinal association).

Conclusions: Secure web messaging improves on e-mail with encryption, access controls, message templates, customized message and prescription routing, knowledge content, and reimbursement. Further study is needed to determine whether reducing telephone traffic through the use of web messaging decreases provider interruptions and increases clinical efficiency during the workday. Satisfaction with web messaging may increase patient retention.

Effective communication between patients and physicians improves health care quality.[1] Poor communication can lead to increased patient stress,[2] decreased satisfaction,[1,3] decreased adherence,[4,5] and elevated malpractice risk.[6] Face-to-face contact is not necessary for effective communication. Fifteen percent to 28% of all ambulatory medical contacts are made by telephone[7,8] and 70% of these encounters can be managed without the physician ever seeing the patient.[9]

E-mail does not require patients and providers to be available concurrently. Such asynchronous communication avoids “telephone tag” and the interruptions associated with telephone calls.[10–12] Telephone messages are often overlooked, misplaced, or transcribed incorrectly. E-mails are less likely to be lost, do not require transcription, and can be printed or attached to the chart.[10,11] Recognizing these advantages, the Institute of Medicine calls electronic patient-provider communication a core functionality of an electronic health record.[13]

Internet access has greatly increased in recent years. Of the 67% to 78% of U.S. adults with Internet access, [14–16] 90% want to communicate with their physicians electronically.[17] Of these, 56% say it would influence their choice of physician.[17] Physicians are far more reluctant. Although 89% of physicians have Internet access,[18] only 13% to 21% communicate with their patients by e-mail.[19,20] Several barriers to adoption can explain this low rate. Few payers reimburse for online patient care,[17,21,22] although the American College of Physicians, among others, has advocated that Medicare do so.[22] Security concerns are another barrier. Many physicians and patients report reluctance to use unencrypted e-mail that could be intercepted by unauthorized individuals.[23–25] Physicians also fear being overwhelmed by patient e-mails.[11,17,23–26] Katz et al. found e-mail increased the communication burden on physicians and staff, and concluded e-mail did little to improve the efficiency and effectiveness of clinical care.[27] Potential liability due to missed diagnosis or delayed treatment of acute problems is another barrier.[10,24] In addition, patients cite slow response times by their physicians as a concern, especially when an urgent response is needed.[23,26,28,29]

Secure web messaging is structured, encrypted communication via common web browsers such as Internet Explorer and Netscape, which improves upon the inherent weaknesses of e-mail.[30] Web messaging can control access and safeguard privacy with userIDs and passwords for providers, staff, and patients.[30,31] Structured forms can generate concise messages, which improve efficiency, and automated message routing to appropriate staff can reduce physician workload.[30,31] Patient fees and copayments can be paid by credit card.[30,31] The health industry has been slower to adopt web messaging technology than other service industries such as online retail and banking.[31]

Several studies report positive results with e-mail and/or web messaging between patients and their providers. Parents, guardians, and pediatric gastroenterologists found that e-mail was faster and more convenient than telephone consultations.[32] Penson et al. conclude e-mail within an established doctor-patient relationship increases patient satisfaction and doctor-patient communication.[33] A recent pilot study of web messaging at a primary care clinic found 79% of patients and 61% of physicians preferred it to telephone use.[30]

This study examines how a commercial web messaging system affected patient, provider, and staff satisfaction, and provider message volume. From a pilot study,[30] we hypothesized that: 1) patient satisfaction would be high and would correlate with message response time; 2) provider/staff satisfaction would be mixed and would correlate with ease and frequency of system use; 3) incoming patient message volume would not differ between sites using and not using patient web messaging; and 4) telephone call volume would decrease at the site using web messaging.

http://www.medscape.com/viewarticle/500025?src=trendmd_pilot&trendmd-shared=1

 

Breaking news – still counting: California primary ballot counts favor Bernie Sanders

Dear friends, Our tiny little Los Angeles ballot supervising team, credit mainly to our lead Julie Tyler, just did something really big. Here goes. Provisional ballots have to be counted last, main…

Source: Breaking news – still counting: California primary ballot counts favor Bernie Sanders

Breaking news – still counting: California primary ballot counts favor Bernie Sanders

Dear friends,

Our tiny little Los Angeles ballot supervising team, credit mainly to our lead Julie Tyler, just did something really big.

California Provisional ballots

Provisional ballots have to be counted last, mainly to avoid duplicate votes. They make up an enormous amount of ballots this election cycle–50% of them–and they began their count on Sunday, June 19th, just two days ago.
We noticed that out of the first 4,000 provisional ballots pulled, 1,000 of them were snagged because they were cast as “Democratic” ballots instead of “NPP/crossover Democratic” ballots. If you are NPP and received a Democratic ballot, you fell under the umbrella too.

NPP/crossover Democratic ballot

 For the record, I have never even SEEN an “NPP/crossover Democratic” ballot. Throughout the whole campaign, we, and hundreds of thousands of others, apparently, assumed a Dem ballot and a crossover Dem ballot were the same thing. Anyway, my guess as to why so many miscast ballots rolled in was either due to a misinformed poll worker, or the voter insisted on getting a Democratic ballot thinking they would be safer that way.

CALIFORNIA voter’s intent

 After spending so many hours supervising ballots, the main reason I’ve trusted the efficiency of it is because of their unwavering commitment to honor the voter’s intent. So where did that go?
The concern of 25% of the provisional votes being tossed aside due to a formality was immediately reported on Sunday afternoon.

Count every Democratic ballot cast by an NPP voter

 Yesterday, our little group banned together outside in heartache and frustration. Then something interesting happened. The chief executive took us into a little area down the hallway on the 5th floor, where we received the groundbreaking report:
“I have a bit of good news for you. I want you to know that we looked into it, and we agree that this issue falls under the category of voter intent. We want you to know that we have decided to count every Democratic ballot cast by an NPP voter.” -Aaron Nevarez, Chief Executive Assistant of the Los Angeles Voters Registrar
Now that 66,500 NPP voters’ Democratic ballots will be counted in Los Angeles as of around 1:00pm yesterday, this could mean the recovery of up to 580,000 uncounted votes in California. That’s an eighth of the votes of the state. We have 16 days to get the word out to Secretary of State Alex Padilla and every county in California, who need to follow LA’s lead and get those votes in.

Every county in California, who need to follow LA’s lead and get those votes in

 On a personal level, nothing will replace the wave of chills over my body and the tears that came when we heard the news. We continue to show, ask questions, take notes, have meetings and conference calls, get angry, make headway, take steps backward, but all while continuing to say: “This is not okay. Our system can do better.”

Power of people

Never ever underestimate the power of people vehemently pursuing love and truth.

OUR VOICES ARE THE REVOLUTION.

And no, this is will not be on the news. So please share it.
Love,

Nomi

Vascular cell walls and stress/infection in cancer

cancer immunotherapy

What is the environment that cancer thrives on? Will our immune system help in the fight against cancer? How do we strengthen our vascular cell walls? How do we remove or fight infection/stress at the cellular level.

What are important genes that can help us in the fight against cancer?  How can our body fight cancer?  What is the role of authophagy in cancer development?

autophagy

PDCD1 gene

PDCD1 gene: This gene encodes a cell surface membrane protein of the immunoglobulin superfamily. This protein is expressed in pro-B-cells and is thought to play a role in their differentiation. In mice, expression of this gene is induced in the thymus when anti-CD3 antibodies are injected and large numbers of thymocytes undergo apoptosis. Mice deficient for this gene bred on a BALB/c background developed dilated cardiomyopathy and died from congestive heart failure. These studies suggest that this gene product may also be important in T cell function and contribute to the prevention of autoimmune diseases. [provided by RefSeq, Jul 2008]

CTLA4

CTLA4: This gene is a member of the immunoglobulin superfamily and encodes a protein which transmits an inhibitory signal to T cells. The protein contains a V domain, a transmembrane domain, and a cytoplasmic tail. Alternate transcriptional splice variants, encoding different isoforms, have been characterized. The membrane-bound isoform functions as a homodimer interconnected by a disulfide bond, while the soluble isoform functions as a monomer. Mutations in this gene have been associated with insulin-dependent diabetes mellitus, Graves disease, Hashimoto thyroiditis, celiac disease, systemic lupus erythematosus, thyroid-associated orbitopathy, and other autoimmune diseases. [provided by RefSeq, Jul 2008]

CD274 gene

CD274 gene: This gene encodes an immune inhibitory receptor ligand that is expressed by hematopoietic and non-hematopoietic cells, such as T cells and B cells and various types of tumor cells. The encoded protein is a type I transmembrane protein that has immunoglobulin V-like and C-like domains. Interaction of this ligand with its receptor inhibits T-cell activation and cytokine production. During infection or inflammation of normal tissue, this interaction is important for preventing autoimmunity by maintaining homeostasis of the immune response. In tumor microenvironments, this interaction provides an immune escape for tumor cells through cytotoxic T-cell inactivation. Expression of this gene in tumor cells is considered to be prognostic in many types of human malignancies, including colon cancer and renal cell carcinoma. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]

SNCA gene: Alpha-synuclein is a member of the synuclein family, which also includes beta- and gamma-synuclein. Synucleins are abundantly expressed in the brain and alpha- and beta-synuclein inhibit phospholipase D2 selectively. SNCA may serve to integrate presynaptic signaling and membrane trafficking. Defects in SNCA have been implicated in the pathogenesis of Parkinson disease. SNCA peptides are a major component of amyloid plaques in the brains of patients with Alzheimer’s disease. Four alternatively spliced transcripts encoding two different isoforms have been identified for this gene. [provided by RefSeq, Mar 2009]

IFNG gene

IFNG gene: This gene encodes a soluble cytokine that is a member of the type II interferon class. The encoded protein is secreted by cells of the both the innate and adaptive immune systems. The active protein is a homodimer that binds to the interferon gamma receptor which triggers a cellular response to viral and microbial inflections. Mutations in this gene are associated with an increased susceptibility to viral, bacterial and parasitic infections and to several autoimmune diseases. [provided by RefSeq, Sep 2015]

BCL2L11 Gene

BCL2L11 Gene: The protein encoded by this gene belongs to the BCL-2 protein family. BCL-2 family members form hetero- or homodimers and act as anti- or pro-apoptotic regulators that are involved in a wide variety of cellular activities. The protein encoded by this gene contains a Bcl-2 homology domain 3 (BH3). It has been shown to interact with other members of the BCL-2 protein family and to act as an apoptotic activator. The expression of this gene can be induced by nerve growth factor (NGF), as well as by the forkhead transcription factor FKHR-L1, which suggests a role of this gene in neuronal and lymphocyte apoptosis. Transgenic studies of the mouse counterpart suggested that this gene functions as an essential initiator of apoptosis in thymocyte-negative selection. Several alternatively spliced transcript variants of this gene have been identified. [provided by RefSeq, Jun 2013]

Gene description summary is from http://www.genecards.org/Search/Keyword?queryString=PD1

Gkretsi V, Stylianou A, Papageorgis P, Polydorou C, Stylianopoulos T. Remodeling components of the tumor microenvironment to enhance cancer therapy. Front Oncol. 2015;5:214. doi:10.3389/fonc.2015.00214. 2. Nelson D, Fisher S, Robinson B. The ‘‘Trojan Horse’’ Approach to Tumor Immunotherapy: Targeting the Tumor Microenvironment. J Immunol Res. 2014;2014:789069. doi:10.1155/2014/789069.

Tumor microenvironment for cancer progression

Recent studies in the field of cancer research have shed light upon the critical role of tumor microenvironment for cancer progression, highlighted that understanding the interplay between cancer cells and their microenvironment can promote cancer pathogenesis and facilitate the development of more effective therapeutic approaches. The tumor microenvironment consists of tumor blood and lymphatic vessels and the tumor stroma. The latter contains non-cancer cells and tumor ECM components and its effects on cancer cell properties are considered pleiotropic. However, apart from regulating cancer cell behavior, abnormalities of the tumor vasculature and stroma pose barriers to the effective delivery of therapeutic agents, which can compromise treatment outcomes. Thus, understanding the tumor microenvironment and its abnormalities during cancer progression is fundamental for the development of better treatment strategies.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4604307/

Tumor blood vessel hyperpermeability, and compression of intratumoral blood vessels

In this review article, we have summarized the common abnormalities observed in the tumor microenvironment, including tumor blood vessel hyperpermeability, and compression of intratumoral blood vessels due to the development of mechanical forces, as a result of stromal aberrations. We have also indicated molecules that could be used as targets in order to modulate tumor microenvironment, including angiogenic factors, such as VEGF, as well as ECM-remodeling growth factors, such as TGFβ (6). The ultimate research goal would be to make the tumor microenvironment phenotype less “cancerous” and more “normal” by targeting these molecules (165). Strategies that have been developed to normalize cancers include vessel normalization and stress alleviation techniques that can be used alone or in combination depending on tumor type (86).

86: Stylianopoulos T, Jain RK.. Combining two strategies to improve perfusion and drug delivery in solid tumors. Proc Natl Acad Sci U S A (2013) 110:18632–7.10.1073/pnas.1318415110 [PMC free article] [PubMed] [Cross Ref]

165: Jain RK.. Normalizing tumor microenvironment to treat cancer: bench to bedside to biomarkers. J Clin Oncol (2013) 31:2205–18.10.1200/JCO.2012.46.3653 [PMC free article] [PubMed] [Cross Ref]

High rate of glial cell related brain tumor among the educated

Our brain detoxes during sleep (cleansing our brain from toxins during sleep). Our body also detoxifies in many ways as sum up by Dr Mercola.

While there are many different ways to rid your body of accumulated toxins, from detoxifying foods and chemical and/or natural detox agents to saunas, a biological process known as autophagy plays a key role.

The term autophagy means “self-eating,” and refers to the processes by which your body cleans out various debris, including toxins, and recycles damaged cell components.

The video above provides a more in-depth biochemical review of the autophagy processes involved in health and disease. As explained in layman’s terms by Greatist:1

“Your cells create membranes that hunt out scraps of dead, diseased, or worn-out cells; gobble them up; strip ’em for parts; and use the resulting molecules for energy or to make new cell parts.”

Dr. Colin Champ, a board-certified radiation oncologist and assistant professor at the University of Pittsburgh Medical Center explains it thus:

“Think of it as our body’s innate recycling program. Autophagy makes us more efficient machines to get rid of faulty parts, stop cancerous growths, and stop metabolic dysfunction like obesity and diabetes.”

By boosting your body’s autophagy process, you dampen inflammation, slow down the aging process, and optimize biological function. As noted by Fight Aging:2

“Greater autophagy taking place in tissue should mean fewer damaged and disarrayed cells at any given moment in time, which in turn should translate to a longer-lasting organism.”

Boosting Autophagy Through Exercise

Like the benefits of exercise, autophagy occurs in response to stress. And, in fact, exercise is one of the ways by which you boost autophagy. As you probably know, exercising creates mild damage to your muscles and tissues that your body then repairs, and by so doing makes your body stronger.

Exercise also helps flush out toxins by sweating, and is helpful for just about any detox program. In fact, many consider exercise a foundational aspect of effective detoxification.

Dr. George Yu, for example, who has been involved with clinical trials to help detoxify people from the Gulf War, recommends using a combination of exercise, sauna, and niacin supplementation to maximize elimination of toxins through your skin.

Exercise is an important component as it also causes vasodilation and increased blood flow. Beyond that, as noted in the featured article:

“One study looked at autophagosomes, structures that form around the pieces of cells that the body has decided to recycle.

After engineering mice to have glowing green autophagosomes … scientists found that the rate at which the mice were healthily demolishing their own cells drastically increased after they ran for 30 minutes on a treadmill.

The rate continued increasing until they’d been running for 80 minutes.”

How Much Exercise Do You Need to Optimize Autophagy?

The amount of exercise required to stimulate autophagy in humans is still unknown, however it is believed that intense exercise is more effective than mild exercise, which certainly makes logical sense.

That said, other research has shown that the “Goldilocks zone” in which exercise produces the greatest benefit for longevity is between 150 to 450 minutes of moderate exercise per week, lowering your risk of early death by 31 and 39 percent respectively.

Spending at least 30 percent of your workout on high-intensity exercises has also been shown to further boost longevity by about 13 percent, compared to exercising at a consistently moderate pace all the time.

Following these general guidelines will likely put you in the most advantageous position for maximizing autophagy as well.

How to Radically Inhibit Autophagy

One of the quickest ways to shut down autophagy is to eat large amounts of protein. What this will do is stimulate IGF-1 and mTOR, which are potent inhibitors of autophagy.

That is why it’s best to limit your protein to about 40 to 70 grams per day, depending on your lean body mass. The specific formula is one gram of protein for every kilogram of lean body mass, or one-half gram of protein per pound of lean body mass.

Substantial amounts of protein can be found in meat, fish, eggs, dairy products, legumes, nuts, and seeds. Some vegetables also contain generous amounts of protein — for example, broccoli. Forty grams of protein is not a large amount of food — it’s the equivalent of one six-ounce chicken breast.

To determine whether or not you’re getting too much protein, simply calculate your body’s requirement based on your lean body mass, and write down everything you eat for a few days. Then calculate the amount of daily protein you’ve consumed from all sources.

If you’re currently averaging a lot more than what is optimal, adjust downward accordingly. The following chart provides a quick overview of how much protein is in various foods.

Red meat, pork, poultry, and seafood average 6 to 9 grams of protein per ounce.

An ideal amount for most people would be a 3-ounce serving of meat or seafood (not 9- or 12-ounce steaks!), which will provide about 18 to 27 grams of protein

Eggs contain about 6 to 8 grams of protein per egg. So an omelet made from two eggs would give you about 12 to 16 grams of protein

If you add cheese, you need to calculate that protein in as well (check the label of your cheese)

Seeds and nuts contain on average 4 to 8 grams of protein per quarter cup Cooked beans average about 7 to 8 grams per half cup
Cooked grains average 5 to 7 grams per cup Most vegetables contain about 1 to 2 grams of protein per ounce

The Importance of Mitochondrial Biogenesis

Healthy mitochondria are at the core of staying healthy and preventing disease. Mitochondrial damage can trigger genetic mutations that can contribute to cancer, so optimizing the health of your mitochondria is a key component of cancer prevention. Autophagy is one way to remove damaged mitochondria, but biogenesis is the process by which new healthy mitochondria can be duplicated.

Interestingly, exercise plays a dual role as it not only stimulates autophagy but is also one of the most potent stimulators of mitochondrial biogenesis. It does this by increasing a signal in your body called AMPK, which in turn activates PGC-1 alpha.

By stimulating  your mitochondria — the organelles in nearly every cell that produce ATP — to work harder, your mitochondria start making reactive oxygen species (ROS), which act as signaling molecules. One of the functions they signal is to make more mitochondria.

In essence, the key to preventing disease — virtually  eliminating the risk of cancer, heart disease, diabetes, many other diseases — and  slowing down the aging process lies in  optimizing mitochondrial function and increasing mitochondrial numbers. Thankfully, exercise helps you do both.

Intermittent Fasting — Another Way to Boost Autophagy

Fasting is another biological stressor that produces many beneficial results, including autophagy. In fact, some of the benefits associated with fasting — such as a reduced risk of diabetes and heart disease — can at least in part be attributed to this process.

While there are many different kinds of intermittent fasting schedules, if you’re insulin resistant, my personal recommendation is to fast every day by scheduling all of your eating within a window of approximately 8 hours or less. For example, you could restrict your eating to the hours of 11am and 7pm. This equates to 16 hours of daily fasting.

I used to recommend skipping breakfast, but I’ve since realized that it probably doesn’t matter which meal you skip — breakfast or dinner — as long as you skip one of them. Some really struggle without breakfast, so play around with it and find out what works best for you.

Eating between the hours of 8 a.m. and 4 p.m. may work better for some people, and this schedule actually has an added advantage, because you’re now fasting for several hours before going to bed. I’m convinced that it’s best for most to avoid eating three hours prior to bed, as the last thing you need to be doing is producing energy when you don’t need it.

There’s compelling evidence showing that when you supply fuel to your mitochondria at a time when they don’t need it, they leak a large number of electrons that liberate reactive oxygen species as free radicals.

These free radicals damage your mitochondrial and eventually nuclear DNA. There’s also evidence indicating that cancer cells uniformly have damaged mitochondria, so eating too close to bedtime is not a good idea. I personally strive for six hours of fasting before bedtime, but at bare minimum, avoid eating at least three hours before going to bed.

To Boost Autophagy, Switch to a High-Fat, Low-Carb Diet

Nutritional ketogenesis is a third strategy that will help boost autophagy, and to accomplish that, you need to cut down on the non-fiber carbs and increase the amount of healthy fat in your diet, along with a moderate amount of protein. (Many Americans tend to eat far more protein than they need, which will counteract your efforts to get into nutritional ketosis.)  According to Champ:3

“Ketogenesis is like an autophagy hack. You get a lot of the same metabolic changes and benefits of fasting without actually fasting … Between 60 and 70 percent of one’s overall calories should come from [healthy] fat … Protein makes up 20 to 30 percent of calories, while carbs are kept below 50 grams per day …  Similar benefits have been noted in people following a diet in which carbs didn’t exceed 30 percent of their overall calories.”

Most Americans consume harmful fats like processed vegetable oils, which will invariably make your health worse. Not only is it processed, it’s very high in omega-6 oils, and excess omega-6 fats will integrate into the inner mitochondrial membrane and become highly susceptible to oxidative damage, causing your mitochondria to die prematurely.

It is best to keep omega-6 fats consumption to less than 4 to 5 percent of your total daily calories Replace the omega-6 fats with healthy fats-  such as natural, unprocessed fat- found in real foods such as seeds, nuts, real butter, olives, avocado, or coconut oil.

It’s also important to make the distinction about which carbs we’re talking about when we say “low-carb,” as vegetables are “carbs” too. However, fiber carbs (i.e. vegetables) will not push your metabolism in the wrong direction — only the non-fiber ones will (think sugars and anything that converts to sugar, such as soda, processed grains, pasta, bread and cookies, for example).

Even more importantly, the fiber is not broken down by sugar but travels down the digestion system, is consumed by bacteria in your intestine, and converted to short chain fats that actually improve your health.

If you look at the nutrition facts on a processed food package, it will list total carbs, and again, that’s not what we’re talking about. To calculate the dangerous non-fiber carbs, simply subtract the grams of fiber from the grams of total carbohydrate in the food in question. Remember, you do need carbs, but you need most all of them from vegetables, which are also high in fiber.

Autophagy Restores Function in Aging Muscle Stem Cells

It has long been known that mesenchymal stem cells (MSCs) in skeletal muscle are an important part of the muscle repair process. Previous research4 has shown that exercise affects the behavior of your muscle stem cells, and may help prevent or even restore age-related muscle loss. MSCs in muscle are very responsive to mechanical strain, and these stem cells accumulate in muscle post-exercise.

And, while the MSCs do not directly contribute to building new muscle fibers, they do release growth factors, which encourage other cells to generate new muscle. It’s also known that people’s muscles tend to become increasingly deficient in MSCs with age, and that autophagy efficiency declines as well. As a result, metabolic waste starts to build up in your cells and tissues.

A recent Spanish study5 reports that satellite cells — muscle stem cells responsible for tissue regeneration — rely on autophagy to prevent the arrest of the cell cycle, known as cellular senescence; a state in which stem cell activity significantly declines. In short, to improve the regeneration of muscle tissue, you need to augment autophagy.

With efficient autophagy — your body’s internal cleaning mechanism — your stem cells retain the ability to maintain and repair your tissues.

As reported by Fight Aging:6

“The researchers demonstrated that restoring youthful levels of autophagy in old satellite cell populations can restore them from senescence and return their regenerative capabilities … The paper … is one of the more compelling of recent arguments for putting more effort into treatments based on artificially increased levels of autophagy …

[M]any of the methods known to modestly slow aging in laboratory species are associated with increased levels of autophagy. It is a vital component in hormesis, wherein causing a little damage leads to a lasting increase in autophagy and a net gain. Stem cells spend much of their time in a state of quiescence, only springing into action when called upon.

This helps to preserve them for the long term. In older tissues with greater levels of molecular damage, ever more stem cells slip from quiescence into an irreversible senescent state. These senescent cells are no longer capable of generating new cells, and start to secrete all sorts of harmful signal molecules.”

Health and Longevity Are Rooted in Mitochondrial Function

The take-home message here is that your lifestyle determines your fate in terms of how long you’ll live and, ultimately, how healthy those years will be. For optimal health and disease prevention, you need healthy mitochondria and efficient autophagy (cellular cleaning and recycling), and three key lifestyle factors that have a beneficial effect on both are:

  1. What you eat: A diet high in quality fats, moderate in protein, and low in non-fiber carbs. Eating organic and grass-fed is also important, as commonly used pesticides like glyphosate cause mitochondrial damage
  2. When you eat: Daily intermittent fasting tends to be the easiest to adhere to, but any fasting schedule that you will consistently follow will work
  3. Exercise, with high intensity interval exercises being the most effective

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Why can’t exercise cure neurological disease when the disease is caught early?

Why can't exercise cure neurological disease when the disease is caught early? by Connie b. Dellobuono

Answer by Connie b. Dellobuono:

All the cells in our body is enriched by exercise, sleep, nutrition, positive emotions (forgiveness), light (Vitamin D) and music. All the cells in our body are affected by toxins, inflammation and other factors that weaken the immune system (which is influenced by the gut microbiome, health of our mothers when we are in her womb, genes of our fathers, health of our grandma). Volunteering and being with positive and loving people helps in our emotions. Chemical imbalance between serotonin and dopamine is also important. In the first trimester of the fetus, the brain is being developed and can easily be influenced by meds/drugs/alcohol and other factors inside the mother's body. A recent study also showed the older age and alcohol consumption of the father affecting the fetus. So many multifactorial causes we cannot explain. The conditioning that we get from the environment we live also have a positive effect on our mental health.

Why can't exercise cure neurological disease when the disease is caught early?